Factsheet for AT1G05880.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10159	Canola	cytosol	49.19	46.21
Bra015460.1-P	Field mustard	nucleus	47.98	45.77
CDY47702	Canola	cytosol	47.58	45.3
AT2G31510.1	Thale cress	nucleus	42.34	37.37
AT2G31760.1	Thale cress	nucleus	36.09	34.82
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.48	34.38
AT1G05890.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	40.32	33.67
AT2G31780.1	Thale cress	nucleus	29.64	33.18
AT2G31770.1	Thale cress	nucleus	36.09	32.97
AT1G65430.1	Thale cress	nucleus	37.1	32.45
KRH24184	Soybean	nucleus	29.64	28.16
AT5G08730.1	Thale cress	cytosol	22.98	22.8
AT5G63730.1	Thale cress	cytosol	20.77	20.36
AT5G63750.1	Thale cress	nucleus	21.98	20.34
AT2G16090.1	Thale cress	nucleus	22.58	18.89
AT3G27710.1	Thale cress	nucleus	20.36	18.81
AT5G63760.2	Thale cress	nucleus	17.14	18.81
AT4G34370.1	Thale cress	nucleus	22.58	18.76
AT3G27720.1	Thale cress	nucleus	16.94	17.04

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:837098	ProteinID:AAF29395.1	ProteinID:AEE27910.1
ProteinID:AEE27911.1	EMBL:AK221317	EMBL:AK230389	Symbol:ARI12	ArrayExpress:AT1G05880	EnsemblPlantsGene:AT1G05880
RefSeq:AT1G05880	TAIR:AT1G05880	RefSeq:AT1G05880-TAIR-G	EnsemblPlants:AT1G05880.2	TAIR:AT1G05880.2	Symbol:ATARI12
Unigene:At.49860	EMBL:BX816332	ProteinID:CAD52894.1	InterPro:E3_UB_ligase_RBR	GO:GO:0000151	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436	GO:GO:0042787	GO:GO:0046872
GO:GO:0061630	GO:GO:0071456	InterPro:IBR_dom	InterPro:IPR013083	RefSeq:NP_001184919.1	RefSeq:NP_172079.2
PFAM:PF01485	PO:PO:0009005	PO:PO:0009047	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	UniProt:Q84RQ9
SUPFAM:SSF57850	UniParc:UPI000185D540	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

ARI12Probable E3 ubiquitin-protein ligase ARI12 [Source:UniProtKB/Swiss-Prot;Acc:Q84RQ9]

Coordinates

chr1:+:1775643..1778553

Molecular Weight (calculated)

56497.4 Da

IEP (calculated)

5.121

GRAVY (calculated)

-0.524

Length

496 amino acids

Sequence
(BLAST)

001: MDNNSVIGSE VDAEADESYV NAALEDGQTG KKSVQRNYAT VLTEEDIRAL MEIDVQSVSD FTSLSKAEAT LLLSHLRWNV DCICKQWSAG AQSVRDSVGL
101: LELDPPSDDN EYFCGACGES HPHKNLASVS CGHRICTRCW TSHINKIISE KPAAEWNLWL KCPVRVGLHA SCPASVGLDT IERFASKREK FNYNQYLLRS
201: YVDNRETMKW HPIQGSRCAI DLSPGSGNAS VSCHRLVRFC WNCREDAHSP VDCKTAAKWL LENAVPCPKC KLRIPRNQDN SLKMKCLPCN YVFCWFCHVD
301: WIEDMEGTGG DLHFCTFDAV LSDQRGKMSE SDSNRYEDCY ENWDSNELLM QKEQANLPKL DTIIQELSNT QLENVSQLKF ILEAGLQIIE CRRVLEWTYV
401: YGYYLREDEV GKQNLLKDTQ ERLKKFVENL KHCLETNLQP FRYEEEPSKD FNAFRIKLTE LTSLTRNHYE NVVKDVENGL ASVVSEGEAS GSGRNQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.