Factsheet for GSMUA_AchrUn_randomP15000_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P28580_001	Banana	nucleus	68.36	62.5
GSMUA_Achr9P07970_001	Banana	nucleus	66.21	61.41
GSMUA_Achr8P28870_001	Banana	nucleus	70.12	61.16
GSMUA_Achr3P16920_001	Banana	nucleus	67.38	58.77
KRH24184	Soybean	nucleus	42.38	41.57
Bra015460.1-P	Field mustard	nucleus	36.91	36.35
CDY47702	Canola	cytosol	36.91	36.28
CDY10159	Canola	cytosol	37.3	36.17
AT1G05880.2	Thale cress	cytosol	34.38	35.48
CDX99146	Canola	nucleus	25.59	29.37
Bra018221.1-P	Field mustard	cytosol	25.39	28.95
GSMUA_Achr5P01850_001	Banana	nucleus	29.88	28.39
CDX99147	Canola	nucleus	18.75	27.12
AT5G08730.1	Thale cress	cytosol	25.39	26.0
AT5G63750.1	Thale cress	nucleus	26.17	25.0
CDY44786	Canola	nucleus	23.44	24.9
Bra028646.1-P	Field mustard	nucleus	23.05	24.84
CDY40734	Canola	nucleus	23.05	24.74
Bra038659.1-P	Field mustard	nucleus	24.02	24.55
CDX84438	Canola	cytosol	17.38	24.18
Bra038658.1-P	Field mustard	nucleus	20.12	23.84
AT5G63730.1	Thale cress	cytosol	23.44	23.72
AT5G63760.2	Thale cress	nucleus	20.9	23.67
CDY41533	Canola	nucleus	24.22	23.35
GSMUA_Achr6P23120_001	Banana	nucleus	28.52	22.71
CDY39850	Canola	nucleus	19.73	22.65
CDY31353	Canola	nucleus	19.53	22.47
Bra029204.1-P	Field mustard	nucleus	19.53	22.47
CDY41534	Canola	nucleus	7.81	21.62
Bra038660.1-P	Field mustard	cytosol	7.81	21.62
Bra038276.1-P	Field mustard	cytosol	25.39	21.56
CDY21562	Canola	nucleus	24.41	18.83
CDX84439	Canola	nucleus	24.02	18.75
Bra009365.1-P	Field mustard	cytosol	24.41	18.68
CDX69926	Canola	cytosol, mitochondrion, nucleus	24.41	18.63

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_AchrUn_randomG15000_001	EnsemblPlants:GSMUA_AchrUn_randomP15000_001
EnsemblPlants:GSMUA_AchrUn_randomT15000_001	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	UniProt:M0U9A9	PFAM:PF01485
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00647	SUPFAM:SSF57850
UniParc:UPI000295EDD0	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

Probable E3 ubiquitin-protein ligase ARI8 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15000_001]

Coordinates

chrchrUn_random:-:70936715..70946985

Molecular Weight (calculated)

59048.0 Da

IEP (calculated)

6.776

GRAVY (calculated)

-0.526

Length

512 amino acids

Sequence
(BLAST)

001: MTGSLFKLIY LFNMTFQNYT ILSEADIRQR QEEDITQICA ILSVSRSAAC NLLCHYKWNV SKVQDEWFAN EENVCKVVGL LHNPVNTSNS RKLNCGICFE
101: SYDRSKMSAA SCGHYFCNAC WKGYISTSIN EGPGCLMLRC PDPSCNAAVD WDMIDRLAGF EEKEKYARHL LRSYVEDSKK IKWCPSPGCE FAVDFDINSI
201: SYDVCCYCSH SFCWNCIEEV HRPVDCGTVA KWIIKNNAES ENTNWILVNS KPCPKCKRPI EKNQGCMHMT CRAPCKFEFC WLCLGAWSEH GAITGGFYSC
301: NGYETARRDG MYDESEKRRK RAKLSLERYT HYYERWVTNE SSRKKALEDL HIMQTNKLEK LSLRQGQSEA QLKFIIDAWL QIVECRRVLK WTYAYGYYLP
401: EHDDTKRQFF EYLQGEAEFG LERLHQCAEK ELQEFLDADT PMKGFDNFRV KLTRLTSVTH NYFENLVQAL ERGLMDVDCS DPQTSSKSCS SSPGNMPGKM
501: KSSKATEADD PS

Best Arabidopsis Sequence Match ( AT1G65430.1 )
(BLAST)

001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR

Arabidopsis Description

ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.