Factsheet for GSMUA_Achr6P23120_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92613	Sorghum	nucleus	72.16	76.82
Os03t0233500-01	Rice	nucleus	71.38	75.0
TraesCS4A01G061500.1	Wheat	nucleus	72.32	75.0
TraesCS4D01G238400.2	Wheat	nucleus	72.16	74.84
TraesCS4B01G236900.1	Wheat	nucleus	72.01	74.68
HORVU4Hr1G066180.1	Barley	nucleus	71.7	74.35
Zm00001d028285_P003	Maize	nucleus	71.07	73.71
HORVU7Hr1G068450.2	Barley	nucleus	28.15	70.7
HORVU1Hr1G018020.1	Barley	cytosol	20.22	70.65
VIT_03s0063g02000.t01	Wine grape	nucleus	60.96	66.55
PGSC0003DMT400064832	Potato	nucleus	60.96	66.44
Solyc01g109280.2.1	Tomato	nucleus	60.81	66.27
KRH24517	Soybean	nucleus	59.41	65.86
KRH29521	Soybean	nucleus	59.25	65.69
CDY49559	Canola	nucleus	57.7	63.75
Bra001960.1-P	Field mustard	nucleus	57.7	63.75
CDX71262	Canola	nucleus	57.08	63.17
AT2G16090.1	Thale cress	nucleus	58.01	62.9
VIT_18s0001g11740.t01	Wine grape	cytosol	53.19	61.62
CDX75425	Canola	nucleus	56.14	61.08
Bra011524.1-P	Field mustard	nucleus	56.14	61.08
CDX69049	Canola	nucleus	56.45	60.8
AT4G34370.1	Thale cress	nucleus	55.68	59.97
Zm00001d048017_P003	Maize	nucleus	69.98	58.82
PGSC0003DMT400043486	Potato	cytosol	47.59	58.73
Solyc04g079780.2.1	Tomato	cytosol	47.59	58.62
AT3G27710.1	Thale cress	nucleus	48.52	58.1
GSMUA_Achr5P01850_001	Banana	nucleus	46.81	55.84
PGSC0003DMT400039948	Potato	nucleus	47.12	55.8
Solyc12g089000.1.1	Tomato	nucleus	46.19	55.31
CDY49768	Canola	nucleus	40.75	54.58
CDY03991	Canola	nucleus	40.12	53.31
Bra033024.1-P	Field mustard	nucleus	43.39	53.04
AT3G27720.1	Thale cress	nucleus	40.59	52.94
Bra039068.1-P	Field mustard	nucleus	42.92	52.67
CDY20037	Canola	nucleus	42.46	52.1
CDY00148	Canola	nucleus	39.19	52.07
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	22.71	28.52
GSMUA_Achr6P28580_001	Banana	nucleus	23.17	26.61
GSMUA_Achr9P07970_001	Banana	nucleus	22.55	26.27
GSMUA_Achr8P28870_001	Banana	nucleus	23.17	25.38
GSMUA_Achr3P16920_001	Banana	nucleus	22.71	24.87

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr6G23120_001	EnsemblPlants:GSMUA_Achr6P23120_001
EnsemblPlants:GSMUA_Achr6T23120_001	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	UniProt:M0T9G0	PFAM:PF01485
PFAM:PF13445	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850
UniParc:UPI000294ED76	InterPro:Znf-RING_LisH	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Probable E3 ubiquitin-protein ligase ARI2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G23120_001]

Coordinates

chr6:+:23192568..23200029

Molecular Weight (calculated)

72922.7 Da

IEP (calculated)

5.090

GRAVY (calculated)

-0.510

Length

643 amino acids

Sequence
(BLAST)

001: MAEDEDCPSS SDVEEDDCYI TDQEDAIEEN VLQGLEDGRE EDCHWSLSSV SAPSLSLSLF PDSGLKKISF QSLDTDGFLF VLPMSQVITK ESLLAAQKED
101: LRKVMELLVL KEQHARTLLI HYRWDVERIF ELLDQKGRER LFSEAGVTIV ENKGLSASSS SGTCNVCFES FPPGAVTEMD CGHSFCNDCW TEHFIVKIND
201: GQSRRIRCMA PKCSAVCDEA VIRNLVSAKH PDIADRFDRF LLESYIEDNN KVKWCPSVPH CGNAIRVEGD IYCEVECTCG IQFCFSCLSE AHSPCSCLMW
301: ELWTKKCQDE SETVNWITVN TKPCPKCHKP VEKNGGCNLV ACICGQAFCW LCGGATGRDH TWSSISGHSC GRFKDDQAKR TERARRDLYR YMHYHNRYKA
401: HTDSLKQESN LKETIQGKIS ISENKESKIK DYTWVINGLN RLFRSRRVLS YSYPFAFYMF GDELFKDEMT PQERDMKQNL FEDQQQQLEA NVEKLSMFLE
501: KDFQHFSDDE VMDIMRHVIN LSNVVDRLCK QMYQCIENDL LYPLQRATHN IAPYKSKGLE RASELSVCWD SDQSLTSTKT SHDDNSAQLG SAHNGIGVAV
601: PSKHASSSSD ESGCSSRKRA RTEAQGGAPL FDLNMPAEVI DKS

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.