Factsheet for Solyc04g079780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043486	Potato	cytosol	96.36	96.55
Solyc12g089000.1.1	Tomato	nucleus	66.86	64.99
VIT_18s0001g11740.t01	Wine grape	cytosol	60.34	56.76
Solyc01g109280.2.1	Tomato	nucleus	59.96	53.05
AT2G16090.1	Thale cress	nucleus	60.15	52.95
Bra001960.1-P	Field mustard	nucleus	58.62	52.58
CDY49559	Canola	nucleus	58.62	52.58
CDX71262	Canola	nucleus	58.43	52.5
CDY49768	Canola	nucleus	47.89	52.08
AT3G27710.1	Thale cress	nucleus	52.3	50.84
CDY03991	Canola	nucleus	47.13	50.83
Bra033024.1-P	Field mustard	nucleus	51.15	50.76
AT4G34370.1	Thale cress	nucleus	57.47	50.25
CDX75425	Canola	nucleus	56.7	50.08
Bra011524.1-P	Field mustard	nucleus	56.7	50.08
Bra039068.1-P	Field mustard	nucleus	50.0	49.81
CDY20037	Canola	nucleus	49.81	49.62
CDX69049	Canola	nucleus	56.32	49.25
CDY00148	Canola	nucleus	45.59	49.17
EER92613	Sorghum	nucleus	56.51	48.84
Os03t0233500-01	Rice	nucleus	56.13	47.88
TraesCS4B01G236900.1	Wheat	nucleus	56.7	47.74
GSMUA_Achr6P23120_001	Banana	nucleus	58.62	47.59
HORVU4Hr1G066180.1	Barley	nucleus	56.51	47.58
TraesCS4D01G238400.2	Wheat	nucleus	56.51	47.58
TraesCS4A01G061500.1	Wheat	nucleus	56.32	47.42
GSMUA_Achr5P01850_001	Banana	nucleus	48.47	46.94
Zm00001d028285_P003	Maize	nucleus	55.36	46.61
AT3G27720.1	Thale cress	nucleus	43.87	46.45
HORVU1Hr1G018020.1	Barley	cytosol	14.75	41.85
TraesCS4D01G070400.1	Wheat	nucleus	42.34	41.39
Os03t0625800-01	Rice	cytosol	42.72	41.3
EER93790	Sorghum	nucleus	41.57	40.04
Zm00001d013716_P002	Maize	nucleus	40.61	39.7
TraesCS4B01G071700.1	Wheat	nucleus	41.0	39.56
TraesCS4A01G243200.1	Wheat	nucleus	41.0	39.05
TraesCS4D01G070600.1	Wheat	nucleus	40.23	39.03
TraesCS4B01G071800.1	Wheat	nucleus	41.0	38.98
Zm00001d048017_P003	Maize	nucleus	56.13	38.3
TraesCS4D01G069600.1	Wheat	nucleus	39.08	38.2
EER93787	Sorghum	nucleus	39.08	38.13
Os03t0625933-00	Rice	nucleus	23.95	37.99
TraesCS4A01G244200.1	Wheat	nucleus	37.93	36.94
TraesCS4B01G070800.1	Wheat	nucleus	37.74	36.75
HORVU4Hr1G011770.1	Barley	nucleus	37.74	36.69
HORVU7Hr1G068450.2	Barley	nucleus	17.62	35.94
HORVU4Hr1G011910.1	Barley	cytosol, plastid	40.42	34.48
Os03t0626100-01	Rice	nucleus	36.97	33.86
Solyc06g073340.2.1	Tomato	nucleus	29.31	27.82
Solyc11g008580.1.1	Tomato	nucleus	27.01	23.86
Solyc01g005650.1.1	Tomato	nucleus	22.22	22.22
Solyc01g044340.2.1	Tomato	cytosol	3.64	13.87
Solyc01g044350.2.1	Tomato	mitochondrion	0.38	0.67

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0000151	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624
GO:GO:0032436	GO:GO:0042787	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4BV57	PFAM:PF00097	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685
PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc04g079780.2	EnsemblPlants:Solyc04g079780.2.1	UniParc:UPI00027673A8
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:64113641..64116532

Molecular Weight (calculated)

60718.3 Da

IEP (calculated)

4.632

GRAVY (calculated)

-0.577

Length

522 amino acids

Sequence
(BLAST)

001: MDDIYGSDED YYNGEYEDDY DRDPEPESDD DLSCGKAPSC RVIKKESLLA AQKEDLQRVV DLLSLKEHHA RTLLIHYQWD VDKVFAIFVE RGKERLFVEA
101: GITLEEKNEN PSSDPSTEYT CEICFEDFPD EQTTLMECNH RFCNDCWTEY FVVKINDGKS RRVTCMAQKC KAICDEGKIR DLVTAKDPNL AEKFDRFILE
201: SYIEDNKRVK WCPSVPHCGN AIRVEDDEYC EVECACGQQF CFNCLCELHS PCSCVMWDLW LKKCDDEAPT VNWLSEKTKH CPKCHKIVEK DGGCNLVQCI
301: CGQPFCWLCG EATGFEHTWN SIAGHTCGRY KENHLKSEED SVEDYWRLTH YYSRYKAHIG SLKIEASESK QKILDKVHSL ESKEFQLKDF SWAMSGFYRL
401: ALSRRVLACS YPFAYYYFGA LFANEITKEE REIKQNLFED QQQQLETNIE RLSMFLEEPF GSYAEDKLVE TRMKIITLST VTDDLCKNLY ECIDNDLLVP
501: LQQATHTIVR YRSNGVEKAS EL

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.