Factsheet for Os03t0626100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0625933-00	Rice	nucleus	35.79	62.01
TraesCS4A01G244200.1	Wheat	nucleus	52.28	55.6
TraesCS4D01G069600.1	Wheat	nucleus	51.93	55.43
Os03t0625800-01	Rice	cytosol	52.46	55.37
TraesCS4B01G070800.1	Wheat	nucleus	51.05	54.29
HORVU4Hr1G011770.1	Barley	nucleus	50.88	54.0
VIT_18s0001g11740.t01	Wine grape	cytosol	36.32	37.3
PGSC0003DMT400043486	Potato	cytosol	33.86	37.04
Solyc04g079780.2.1	Tomato	cytosol	33.86	36.97
GSMUA_Achr5P01850_001	Banana	nucleus	34.74	36.73
AT3G27710.1	Thale cress	nucleus	34.56	36.69
Os03t0233500-01	Rice	nucleus	39.12	36.44
KRH29521	Soybean	nucleus	37.02	36.38
KRH24517	Soybean	nucleus	36.67	36.03
CDX71262	Canola	nucleus	36.67	35.97
CDY49559	Canola	nucleus	36.67	35.91
Bra001960.1-P	Field mustard	nucleus	36.67	35.91
Bra039068.1-P	Field mustard	nucleus	32.81	35.69
VIT_03s0063g02000.t01	Wine grape	nucleus	36.84	35.65
Solyc01g109280.2.1	Tomato	nucleus	36.84	35.59
PGSC0003DMT400064832	Potato	nucleus	36.84	35.59
PGSC0003DMT400039948	Potato	nucleus	33.86	35.54
Bra011524.1-P	Field mustard	nucleus	36.84	35.53
CDX75425	Canola	nucleus	36.84	35.53
CDY20037	Canola	nucleus	32.63	35.5
Solyc12g089000.1.1	Tomato	nucleus	33.33	35.38
AT2G16090.1	Thale cress	nucleus	36.67	35.24
CDX69049	Canola	nucleus	36.84	35.18
CDY00148	Canola	nucleus	29.82	35.12
AT4G34370.1	Thale cress	nucleus	35.79	34.17
Bra033024.1-P	Field mustard	nucleus	31.4	34.03
CDY49768	Canola	nucleus	28.6	33.96
CDY03991	Canola	nucleus	28.77	33.88
AT3G27720.1	Thale cress	nucleus	27.89	32.25
Os04t0492100-01	Rice	nucleus	19.65	23.73
Os09t0559000-00	Rice	cytosol	21.4	23.24
Os09t0513800-01	Rice	cytosol, mitochondrion, nucleus	21.75	22.79
Os08t0540300-01	Rice	nucleus	23.33	21.91
Os09t0559100-00	Rice	nucleus	6.84	19.8

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:4333496	ProteinID:AAR01656.1	ProteinID:ABF97712.1
ProteinID:BAF12613.1	ProteinID:BAS85344.1	InterPro:E3_UB_ligase_RBR	ProteinID:EAZ27843.1	GO:GO:0000151	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624
GO:GO:0032436	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083
EnsemblPlantsGene:Os03g0626100	EnsemblPlants:Os03t0626100-01	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150
UniProt:Q75LV3	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI00001D8EB3	RefSeq:XP_015630156.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Zinc finger, C6HC-type domain containing protein. (Os03t0626100-01)

Coordinates

chr3:+:23836063..23839587

Molecular Weight (calculated)

62329.0 Da

IEP (calculated)

5.496

GRAVY (calculated)

-0.334

Length

570 amino acids

Sequence
(BLAST)

001: MDGSDDECCY YYDAVDSDGD EEEEEEIIML DEDDVGLLDG AALPPPEEEV EHRAICWAIT KESLAAAQEQ DLSMVMNLVN VERHNARALL AHHRWKMERI
101: YDRLDMMGRD ALLRDAGVVV LPEKSSSSGS SMAMAKTNPP GSVAVTCNVC FEEYPLGSVS AMDCGHCFCN DCWTEYFAAA VSDGSKQMRC MEVKCTAICD
201: EAVVRLLLHG KHPGAAARLD RRLLEACVEA SDAVRWCPSA PHCGRAIRVD GGGGGEERYA EVSCPCGAVF CFRCGGGAHS PCPCPMWDKW GAMRGGGEVD
301: NLKWIVANTK SCPKCSKPIE KNGGCNHVTC TCGQHLCYAC GAATGTLYMH ICNRYKEEGG GGGVKVEMTA GGRQRLRFMH YYERFEIHTE SYKEEQGKLG
401: PAIDALARRL EADATLPWSG TRDARWPSAA HRRLLRCRQV LPRSYVLAYY MFGGGAATRR EREEAAAQNR FEDLQGQLEH HVEVLSRTLA AAARPADAAE
501: VVKAKRDADN LARVVEGLCA GMYRCVQDEL LPLLVEPMNI AAYHPDGPAM AKEFPPATSV TGGAPPATRH

Best Arabidopsis Sequence Match ( AT4G34370.1 )
(BLAST)

001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN

Arabidopsis Description

ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.