Factsheet for TraesCS4D01G069600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G244200.1	Wheat	nucleus	97.75	97.39
TraesCS4B01G070800.1	Wheat	nucleus	96.07	95.71
HORVU4Hr1G011770.1	Barley	nucleus	91.57	91.06
TraesCS4D01G070400.1	Wheat	nucleus	57.12	57.12
TraesCS4D01G070600.1	Wheat	nucleus	55.24	54.83
Os03t0626100-01	Rice	nucleus	55.43	51.93
GSMUA_Achr5P01850_001	Banana	nucleus	39.51	39.15
Solyc04g079780.2.1	Tomato	cytosol	38.2	39.08
PGSC0003DMT400043486	Potato	cytosol	38.02	38.96
VIT_18s0001g11740.t01	Wine grape	cytosol	40.07	38.56
PGSC0003DMT400039948	Potato	nucleus	38.2	37.57
CDX71262	Canola	nucleus	40.82	37.52
VIT_03s0063g02000.t01	Wine grape	nucleus	41.39	37.52
CDY49768	Canola	nucleus	33.71	37.5
PGSC0003DMT400064832	Potato	nucleus	41.2	37.29
Bra001960.1-P	Field mustard	nucleus	40.64	37.29
CDY49559	Canola	nucleus	40.64	37.29
Solyc01g109280.2.1	Tomato	nucleus	41.01	37.12
KRH29521	Soybean	nucleus	40.26	37.07
Solyc12g089000.1.1	Tomato	nucleus	37.27	37.06
AT3G27710.1	Thale cress	nucleus	37.27	37.06
CDY00148	Canola	nucleus	33.33	36.78
Bra033024.1-P	Field mustard	nucleus	36.14	36.69
KRH24517	Soybean	nucleus	39.7	36.55
CDY03991	Canola	nucleus	32.96	36.36
Bra039068.1-P	Field mustard	nucleus	35.58	36.26
Bra011524.1-P	Field mustard	nucleus	40.07	36.21
CDX75425	Canola	nucleus	40.07	36.21
AT4G34370.1	Thale cress	nucleus	40.45	36.18
CDY20037	Canola	nucleus	35.39	36.07
TraesCS4D01G238400.2	Wheat	nucleus	41.76	35.97
CDX69049	Canola	nucleus	39.89	35.68
AT2G16090.1	Thale cress	nucleus	39.51	35.58
AT3G27720.1	Thale cress	nucleus	31.27	33.87
TraesCS7D01G073800.1	Wheat	nucleus	24.34	26.48
TraesCS5D01G305000.1	Wheat	nucleus	23.97	22.78
TraesCS6D01G198600.5	Wheat	nucleus	23.78	21.56
TraesCS5D01G370300.1	Wheat	nucleus	23.97	21.51
TraesCS7D01G267600.2	Wheat	nucleus	24.16	21.36
TraesCS2D01G348000.2	Wheat	nucleus	23.41	21.22
TraesCS6D01G402400.1	Wheat	nucleus	20.41	19.33

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF207	SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4D01G069600
EnsemblPlants:TraesCS4D01G069600.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:-:44836268..44840260

Molecular Weight (calculated)

60800.1 Da

IEP (calculated)

6.384

GRAVY (calculated)

-0.518

Length

534 amino acids

Sequence
(BLAST)

001: MASDDESYLY YDEDDEEEDG LEADEDDVGL FEDAAPQPEH RADHWAITRK SLSAAQQQDV SMVMNLVNLE RHNARALLMH HRWKMDRIHD FLERRGREGL
101: FREAGIVVPP EDSSTAARAR VPPHKRPRTV TCNVCFEDVS RPSDVSTMDC GHCFCNDCWT EHFFASLGNG KKHIHCMQVK CPAICDDGTV RRLLGRKYPD
201: AAKRFDNLVL DSYLDNNASV KWCPSAPHCG RAIRVVDASE RYCEVECPCG VSFCFNCAAP AHSPCPCPMW DKWDAKFRGE SENLKWIAVN TKSCPKCLRP
301: IEKNGGCNHV SCPCGQHLCY ACGGRLDSLH NCNRYDEAGH ANYDSIRRQM LRYTHYCDRF NVHINSRKVE QTELWPAIQK RAVLLESATA IRPLIREASW
401: MARAHRALLA SRLVLARSYA FAYYMFGDEV RTYPSEKANL PIAKVLFEDQ QWQLEENAEK LSKVLAAEAK PVLAEEEVLR AMQETSNLAK IVDTHCREMY
501: KCIQDELLPL LLEPMTIAPY RPDGPDKAKD LPAP

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.