Factsheet for VIT_18s0001g11740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g02000.t01	Wine grape	nucleus	68.29	64.35
PGSC0003DMT400043486	Potato	cytosol	57.84	61.61
Solyc04g079780.2.1	Tomato	cytosol	56.76	60.34
Bra001960.1-P	Field mustard	nucleus	63.24	60.31
CDY49559	Canola	nucleus	63.24	60.31
CDX71262	Canola	nucleus	62.52	59.72
AT2G16090.1	Thale cress	nucleus	62.34	58.35
PGSC0003DMT400039948	Potato	nucleus	56.76	58.01
Solyc12g089000.1.1	Tomato	nucleus	56.04	57.91
AT4G34370.1	Thale cress	nucleus	60.36	56.11
Bra011524.1-P	Field mustard	nucleus	59.28	55.67
CDX75425	Canola	nucleus	59.28	55.67
AT3G27710.1	Thale cress	nucleus	53.69	55.49
CDX69049	Canola	nucleus	59.46	55.28
EER92613	Sorghum	nucleus	59.64	54.8
CDY00148	Canola	nucleus	47.75	54.75
Bra039068.1-P	Field mustard	nucleus	51.53	54.58
CDY20037	Canola	nucleus	51.35	54.39
Os03t0233500-01	Rice	nucleus	59.82	54.25
GSMUA_Achr6P23120_001	Banana	nucleus	61.62	53.19
HORVU4Hr1G066180.1	Barley	nucleus	59.1	52.9
TraesCS4A01G061500.1	Wheat	nucleus	58.92	52.74
CDY49768	Canola	nucleus	45.59	52.71
Zm00001d028285_P003	Maize	nucleus	58.74	52.58
TraesCS4B01G236900.1	Wheat	nucleus	58.74	52.58
TraesCS4D01G238400.2	Wheat	nucleus	58.56	52.42
Bra033024.1-P	Field mustard	nucleus	49.37	52.09
CDY03991	Canola	nucleus	45.41	52.07
GSMUA_Achr5P01850_001	Banana	nucleus	49.19	50.65
AT3G27720.1	Thale cress	nucleus	43.06	48.48
HORVU1Hr1G018020.1	Barley	cytosol	15.68	47.28
Zm00001d048017_P003	Maize	nucleus	59.28	43.01
TraesCS4D01G070400.1	Wheat	nucleus	41.08	42.7
TraesCS4B01G071700.1	Wheat	nucleus	40.72	41.77
EER93790	Sorghum	nucleus	40.72	41.7
HORVU7Hr1G068450.2	Barley	nucleus	19.1	41.41
TraesCS4A01G243200.1	Wheat	nucleus	40.72	41.24
TraesCS4D01G070600.1	Wheat	nucleus	39.82	41.08
TraesCS4B01G071800.1	Wheat	nucleus	40.54	40.98
Os03t0625800-01	Rice	cytosol	39.64	40.74
Zm00001d013716_P002	Maize	nucleus	38.92	40.45
EER93787	Sorghum	nucleus	38.74	40.19
TraesCS4D01G069600.1	Wheat	nucleus	38.56	40.07
TraesCS4A01G244200.1	Wheat	nucleus	38.2	39.55
Os03t0625933-00	Rice	nucleus	23.24	39.21
TraesCS4B01G070800.1	Wheat	nucleus	37.84	39.18
HORVU4Hr1G011770.1	Barley	nucleus	37.84	39.11
HORVU4Hr1G011910.1	Barley	cytosol, plastid	40.18	36.44
Os03t0626100-01	Rice	nucleus	37.3	36.32
VIT_05s0102g00160.t01	Wine grape	nucleus	26.85	25.38
VIT_00s0207g00090.t01	Wine grape	nucleus	26.67	25.21

Protein Annotations

Gene3D:1.20.120.1750	EntrezGene:100243709	wikigene:100243709	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	ProteinID:CBI19624
ProteinID:CBI19624.3	UniProt:E0CPX8	InterPro:E3_UB_ligase_RBR	EMBL:FN595227	GO:GO:0000151	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740
GO:GO:0016853	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436	GO:GO:0042787	GO:GO:0046872
GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100243709	wikigene:LOC100243709
PFAM:PF00097	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647
SUPFAM:SSF57850	UniParc:UPI0001BE1A74	ArrayExpress:VIT_18s0001g11740	EnsemblPlantsGene:VIT_18s0001g11740	EnsemblPlants:VIT_18s0001g11740.t01	unigene:Vvi.25389
RefSeq:XP_002283665	RefSeq:XP_002283665.1	RefSeq:XP_010664637.1	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:E0CPX8]

Coordinates

chr18:-:10027143..10031929

Molecular Weight (calculated)

63892.5 Da

IEP (calculated)

5.821

GRAVY (calculated)

-0.533

Length

555 amino acids

Sequence
(BLAST)

001: MGDYISSEDE YYNDYNDDDR DSLDGYQHFR FEGGCQNESA TSSKVITKES LLTAQKEDLH RVMDLLPLGE HHARSLLIHC RWDVERVLAV LVEKGKEQLY
101: ADAGVTVVEH DDLSLSKFSS PLTCNICVDD VSTNEMTIMD CGHYFCNNCW TGYFIVKIND GQSRRIRCMA YKCNAICDEA KIRKLVSARD PNLAERFDRF
201: LLESYIEDNR RVKWCPSVPH CGNAIRVEVD EFCEVECACG LQFCFNCSSE AHSPCSCRMW ELWGKKSQDG SETVNWITVH TKACPKCQKP VEKNGGCNLV
301: SCICGQSFCW LCGGATGRDH TWTNITGHSC GRYKEEDVNK LEHAKRELSR YVHYHDRYKA HTDSFKLEIK LKETIQENIS KLEERDSAFK DFSWLTSGLN
401: RLFRSRRVLS YSYPFAFFMF GDLFNNEMTE AEKEIKQHLF EEQQQQLEAN IEKLSLFIEE PFHQYTEDKV AETRMKIMNM SAITDNLCKK MYECIENDLL
501: GPLQQAIHII APYKSKGVEK ASELPLCWGP NAGDSSINVE ANLKINKTKT SFKSY

Best Arabidopsis Sequence Match ( AT2G16090.4 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGWTSR LDQALESGKS EDTSCSSGKR ARIDESYRNS QTTLLDLNLP AEAIERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.