Factsheet for Zm00001d028285_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92613	Sorghum	nucleus	91.13	93.54
Os03t0233500-01	Rice	nucleus	84.03	85.13
HORVU4Hr1G066180.1	Barley	nucleus	84.68	84.68
TraesCS4A01G061500.1	Wheat	nucleus	84.52	84.52
TraesCS4B01G236900.1	Wheat	nucleus	84.35	84.35
TraesCS4D01G238400.2	Wheat	nucleus	84.19	84.19
HORVU7Hr1G068450.2	Barley	nucleus	32.74	79.3
HORVU1Hr1G018020.1	Barley	cytosol	22.9	77.17
Zm00001d048017_P003	Maize	nucleus	89.52	72.55
GSMUA_Achr6P23120_001	Banana	nucleus	73.71	71.07
VIT_03s0063g02000.t01	Wine grape	nucleus	59.68	62.82
PGSC0003DMT400064832	Potato	nucleus	59.19	62.2
KRH24517	Soybean	nucleus	57.9	61.9
KRH29521	Soybean	nucleus	57.58	61.55
Solyc01g109280.2.1	Tomato	nucleus	58.55	61.53
CDY49559	Canola	nucleus	57.26	61.0
Bra001960.1-P	Field mustard	nucleus	57.1	60.82
AT2G16090.1	Thale cress	nucleus	57.58	60.2
CDX71262	Canola	nucleus	55.97	59.72
VIT_18s0001g11740.t01	Wine grape	cytosol	52.58	58.74
CDX75425	Canola	nucleus	55.16	57.87
Bra011524.1-P	Field mustard	nucleus	55.16	57.87
CDX69049	Canola	nucleus	55.0	57.12
AT4G34370.1	Thale cress	nucleus	54.52	56.62
PGSC0003DMT400043486	Potato	cytosol	46.94	55.85
Solyc04g079780.2.1	Tomato	cytosol	46.61	55.36
AT3G27710.1	Thale cress	nucleus	45.97	53.07
PGSC0003DMT400039948	Potato	nucleus	46.45	53.04
Solyc12g089000.1.1	Tomato	nucleus	45.81	52.89
CDY49768	Canola	nucleus	40.32	52.08
CDY03991	Canola	nucleus	40.32	51.65
Bra039068.1-P	Field mustard	nucleus	42.74	50.57
AT3G27720.1	Thale cress	nucleus	40.0	50.3
CDY20037	Canola	nucleus	42.26	50.0
Bra033024.1-P	Field mustard	nucleus	42.42	50.0
CDY00148	Canola	nucleus	38.87	49.79
Zm00001d013716_P002	Maize	nucleus	37.9	44.01
Zm00001d025750_P011	Maize	extracellular	24.35	25.64
Zm00001d003207_P001	Maize	nucleus	24.19	25.47
Zm00001d046141_P001	Maize	cytosol	11.61	25.35
Zm00001d052709_P002	Maize	plastid	19.68	24.85
Zm00001d031694_P003	Maize	nucleus	24.52	23.24
Zm00001d048683_P001	Maize	nucleus	20.81	22.05
Zm00001d007709_P003	Maize	nucleus	21.77	13.12

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	UniProt:A0A1D6JU68	InterPro:E3_UB_ligase_RBR	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872
InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONL95364.1	PFAM:PF01485	PFscan:PS50089
PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000842981E	EnsemblPlantsGene:Zm00001d028285
EnsemblPlants:Zm00001d028285_P003	EnsemblPlants:Zm00001d028285_T003	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Probable E3 ubiquitin-protein ligase ARI2

Coordinates

chr1:-:29171324..29180599

Molecular Weight (calculated)

71429.8 Da

IEP (calculated)

5.514

GRAVY (calculated)

-0.641

Length

620 amino acids

Sequence
(BLAST)

001: MGRDAEDTSS PVSSSELEQE DDDDCYLSDQ GDDALEESVL HVLEDEHLED CHWSASSVIT KESLLVAQRE DLRKVMELLG LREHHARTLL IHYRWDVERI
101: FELLDQKDRD RLFSEAGIPL QYTRNAGPTS SAEVTCNVCY DDVPPSAASE MDCGHSYCND CWTEYFIVKI NEGQSRRVRC MAPKCNAVCD EAIIRKLVTA
201: RHLDIAERFE RFLLESYIED NDTVKWCPST PHCGNAIRVK GDIYCEVECT CGCQFCFNCS LRAHSPCSCM MWELWIKKCR DESETVNWIT VNTKPCPKCH
301: KPVEKNGGCN LVACICGQAF WNKIFVICKS NFFSWLCGGA TGRDHTWSTI SGHSCGRFTD DQTKKTEQAR RDLYRYMHYH NRYKAHTDSL KQEAKLKNEI
401: QGKISISENK ESKIKDYSWV INGLNRLFRS RRVLSYSYPF AFYMFGDEIF KDEMTPEERE LKQNLFEDQQ QQLEFNVERL SGFLEKDFQL FTDDEVMDTM
501: KHVINLSNVV DRLCKQMYQC IENDLLYPLR TPHNIAPYKS KGIDRASELN ISWDPGEQSS QSTKHSQDEH RNKQASNISG KRTHELHGSS SSNKRERVDV
601: NGGGGALFDL NVPAEVVDKI

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.