Factsheet for TraesCS4A01G061500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G238400.2	Wheat	nucleus	98.06	98.06
TraesCS4B01G236900.1	Wheat	nucleus	98.06	98.06
HORVU4Hr1G066180.1	Barley	nucleus	97.9	97.9
HORVU7Hr1G068450.2	Barley	nucleus	38.39	92.97
Os03t0233500-01	Rice	nucleus	89.19	90.36
EER92613	Sorghum	nucleus	85.65	87.91
Zm00001d028285_P003	Maize	nucleus	84.52	84.52
HORVU1Hr1G018020.1	Barley	cytosol	23.71	79.89
GSMUA_Achr6P23120_001	Banana	nucleus	75.0	72.32
Zm00001d048017_P003	Maize	nucleus	82.58	66.93
KRH24517	Soybean	nucleus	59.19	63.28
VIT_03s0063g02000.t01	Wine grape	nucleus	59.84	62.99
KRH29521	Soybean	nucleus	58.87	62.93
PGSC0003DMT400064832	Potato	nucleus	59.84	62.88
Solyc01g109280.2.1	Tomato	nucleus	59.19	62.2
CDY49559	Canola	nucleus	58.23	62.03
Bra001960.1-P	Field mustard	nucleus	58.23	62.03
AT2G16090.1	Thale cress	nucleus	59.19	61.89
CDX71262	Canola	nucleus	57.42	61.27
CDX75425	Canola	nucleus	56.61	59.39
Bra011524.1-P	Field mustard	nucleus	56.61	59.39
VIT_18s0001g11740.t01	Wine grape	cytosol	52.74	58.92
CDX69049	Canola	nucleus	56.61	58.79
AT4G34370.1	Thale cress	nucleus	56.29	58.46
PGSC0003DMT400043486	Potato	cytosol	47.9	57.01
Solyc04g079780.2.1	Tomato	cytosol	47.42	56.32
AT3G27710.1	Thale cress	nucleus	47.42	54.75
PGSC0003DMT400039948	Potato	nucleus	47.42	54.14
CDY49768	Canola	nucleus	41.61	53.75
Solyc12g089000.1.1	Tomato	nucleus	46.29	53.45
CDY03991	Canola	nucleus	41.61	53.31
Bra039068.1-P	Field mustard	nucleus	44.03	52.1
Bra033024.1-P	Field mustard	nucleus	44.03	51.9
AT3G27720.1	Thale cress	nucleus	41.13	51.72
CDY20037	Canola	nucleus	43.55	51.53
CDY00148	Canola	nucleus	40.16	51.45
TraesCS4A01G243200.1	Wheat	nucleus	39.35	44.53
TraesCS4A01G244200.1	Wheat	nucleus	35.48	41.04
TraesCS6A01G216900.1	Wheat	nucleus	24.68	25.98
TraesCS2A01G349600.1	Wheat	nucleus	24.35	25.64
TraesCS7A01G267200.4	Wheat	nucleus	24.84	25.54
TraesCS4A01G376800.1	Wheat	nucleus	20.0	25.25
TraesCS5A01G298200.1	Wheat	nucleus	22.1	24.46
TraesCS6A01G417200.1	Wheat	nucleus	20.65	22.54
TraesCS5A01G361400.1	Wheat	nucleus	21.29	22.34

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4A01G061500
EnsemblPlants:TraesCS4A01G061500.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:58522763..58527302

Molecular Weight (calculated)

70931.1 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.685

Length

620 amino acids

Sequence
(BLAST)

001: MGRDAEEASQ PASSPEYEQD DDEEDCYLSD QEDDALEESV LQVLEDGNLE DCHWSSSSVI TKEYLLAAQR EDLRKVMELL GLKEHHARTL LIHYRWDVER
101: IFELLDQKGR DKLFSEAGIP LGTANNAGSP SATEVTCNVC YDDVPLSAAS HMDCGHNYCN ECWTEYFIVK INEGQSRRVK CMAPKCNAIC DEALVRKLVS
201: AKRPDIAERF ERFLLESYIE DNDTVKWCPS TPHCGNAIRV KGDIHCEVEC TCGRQFCFNC SSEAHSPCSC VMWELWIKKC RDESETVNWI TVNTKPCPKC
301: HKPVEKNGGC NLVACICGQA FCWLCGGATG RDHTWSSISG HSCGRFTEDQ STRTEQARRD LYRYMHYHNR YKAHTDSLKQ EAKLKRDIQW KISISENKES
401: KIKDYSWVIN GLNRLFRSRR VLSYSYPFAF YMFGDEIFKD EMTPEERELK QNLFEDQQQQ LEFNVERLSG FLEKDFQNFS DEEVMDTMKH VINLSNVVDR
501: LCKQMYQCIE NDLLYPLRTP HNIAPYKSKG LDRASELHIC LDSAEQSSPS TKCSQDEHKS QPGLCSEPGS SLTGKRPILQ MHGSSSDNSG RPSHKRERRD
601: AHGGGALFDL NMPAEVADKI

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.