Factsheet for Zm00001d048017_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92613	Sorghum	nucleus	72.29	91.56
Zm00001d028285_P003	Maize	nucleus	72.55	89.52
Os03t0233500-01	Rice	nucleus	66.54	83.17
HORVU4Hr1G066180.1	Barley	nucleus	66.93	82.58
TraesCS4A01G061500.1	Wheat	nucleus	66.93	82.58
TraesCS4D01G238400.2	Wheat	nucleus	66.54	82.1
TraesCS4B01G236900.1	Wheat	nucleus	66.54	82.1
HORVU1Hr1G018020.1	Barley	cytosol	18.82	78.26
HORVU7Hr1G068450.2	Barley	nucleus	24.97	74.61
GSMUA_Achr6P23120_001	Banana	nucleus	58.82	69.98
VIT_03s0063g02000.t01	Wine grape	nucleus	47.19	61.29
CDY49559	Canola	nucleus	46.41	61.0
Bra001960.1-P	Field mustard	nucleus	46.27	60.82
KRH24517	Soybean	nucleus	45.88	60.52
PGSC0003DMT400064832	Potato	nucleus	46.67	60.51
KRH29521	Soybean	nucleus	45.75	60.34
Solyc01g109280.2.1	Tomato	nucleus	46.27	60.0
CDX71262	Canola	nucleus	45.49	59.9
AT2G16090.1	Thale cress	nucleus	46.41	59.87
VIT_18s0001g11740.t01	Wine grape	cytosol	43.01	59.28
Bra011524.1-P	Field mustard	nucleus	44.71	57.87
CDX75425	Canola	nucleus	44.58	57.7
CDX69049	Canola	nucleus	44.58	57.12
AT4G34370.1	Thale cress	nucleus	44.58	57.12
PGSC0003DMT400043486	Potato	cytosol	38.56	56.62
Solyc04g079780.2.1	Tomato	cytosol	38.3	56.13
AT3G27710.1	Thale cress	nucleus	37.78	53.82
PGSC0003DMT400039948	Potato	nucleus	38.04	53.59
Solyc12g089000.1.1	Tomato	nucleus	37.39	53.26
CDY49768	Canola	nucleus	32.81	52.29
CDY03991	Canola	nucleus	32.81	51.86
Bra039068.1-P	Field mustard	nucleus	34.77	50.76
Bra033024.1-P	Field mustard	nucleus	34.9	50.76
AT3G27720.1	Thale cress	nucleus	32.55	50.51
CDY20037	Canola	nucleus	34.38	50.19
CDY00148	Canola	nucleus	31.37	49.59
Zm00001d013716_P002	Maize	nucleus	30.85	44.19
Zm00001d003207_P001	Maize	nucleus	19.48	25.3
Zm00001d025750_P011	Maize	extracellular	19.48	25.3
Zm00001d052709_P002	Maize	plastid	16.08	25.05
Zm00001d046141_P001	Maize	cytosol	9.15	24.65
Zm00001d031694_P003	Maize	nucleus	19.61	22.94
Zm00001d048683_P001	Maize	nucleus	16.34	21.37
Zm00001d007709_P003	Maize	nucleus	18.17	13.51

Protein Annotations

Gene3D:1.20.120.1750	EntrezGene:103639406	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	UniProt:A0A1D6PFP9	ProteinID:AQL08325.1
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485	PFscan:PS50089
PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI0008443301	EnsemblPlantsGene:Zm00001d048017
EnsemblPlants:Zm00001d048017_P003	EnsemblPlants:Zm00001d048017_T003	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr9:+:148119847..148140639

Molecular Weight (calculated)

87389.8 Da

IEP (calculated)

4.982

GRAVY (calculated)

-0.635

Length

765 amino acids

Sequence
(BLAST)

001: MGRDAEKTSP PVPSSELEQE EDDDCYLSDQ EDDALEESVL HVLEDEHLED CHWSASCVIT KESLLAAQKE DLRKVMELLG LREHHARTLL IHYRWDVERI
101: FELLDQKGRD SLFSEAGIPL QYTNNAGPTS SAEVTCNVCY DDVPPSCALE MDCGHSYCSD CWTEYFIVKI NEGQSRRVRC MAPKCNAICD EAIIRKLVIA
201: RHPDIAERFE RFLLESYIED NDTVKWCPST PHCGNAIRVK GDIYCEVECT CGCQFCFNCS LQTHSPCSCM MWELWIKKCH DESETVNWIT VNTKPCPKCH
301: KPVEKNGGCN LVACICGQAF CWLCGGATGR DHTWSSISGH SCGRFTNDQT KKTEQARRDL YRYMHYHNRY KAHTDSLKQE AKLKNEIQGK ISISENKESK
401: IKDYSWVING LNRLFRSRRV LSYSYPFAFY MFGDEIFKDE MTPQERELKQ NLFEDQQQQL EFNVERLSGF LEKDFQLFTD DEVMDTMKHV INLSNVVDRL
501: CKQMYQCIEN DLLYPLRTPH NIAPYKSKGL DRASELNISW DPAEQSSQST KHSQEDEHRN QPASISLGKR THELHGSSSA QARVAALESR EVIAVEALKK
601: AKDEHVQKLM EAYMVTHNQR RALRIQEPAS SNPVQSKRAE DPHILEGHPV SIRGDKKTWE LPEGAIVLEG IPVFPQAMDK QEHLESSQDS PPELFEPLTL
701: KKIPAPSREI KEEAASTPPA PPPSEELQEP VQLEEEFDPV LPSQLPPEEV INISSLLTHP GDISD

Best Arabidopsis Sequence Match ( AT2G16090.4 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGWTSR LDQALESGKS EDTSCSSGKR ARIDESYRNS QTTLLDLNLP AEAIERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.