Factsheet for Zm00001d052709_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G056020.3	Barley	cytosol	40.53	70.57
Os08t0540300-01	Rice	nucleus	77.39	62.6
Zm00001d031694_P003	Maize	nucleus	82.89	62.23
TraesCS7B01G165100.2	Wheat	nucleus	74.54	60.6
TraesCS7A01G267200.4	Wheat	nucleus	74.34	60.53
TraesCS7D01G267600.2	Wheat	nucleus	73.93	60.1
HORVU7Hr1G056040.5	Barley	nucleus, plastid	73.93	54.67
Zm00001d025750_P011	Maize	extracellular	60.29	50.25
Zm00001d003207_P001	Maize	nucleus	59.88	49.92
Zm00001d046141_P001	Maize	cytosol	25.87	44.72
Zm00001d048683_P001	Maize	nucleus	34.01	28.55
Zm00001d013716_P002	Maize	nucleus	21.79	20.04
Zm00001d028285_P003	Maize	nucleus	24.85	19.68
Zm00001d007709_P003	Maize	nucleus	37.07	17.69
Zm00001d048017_P003	Maize	nucleus	25.05	16.08

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:2.20.28.140	UniProt:A0A1D6QJ03	ProteinID:AQK57780.1	InterPro:E3_UB_ligase_RBR
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
InterPro:IBR_dom	InterPro:IPR001876	PFAM:PF01485	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR11685
PANTHER:PTHR11685:SF154	SMART:SM00547	SMART:SM00647	SUPFAM:SSF57850	SUPFAM:SSF90209	UniParc:UPI000842C22D
EnsemblPlantsGene:Zm00001d052709	EnsemblPlants:Zm00001d052709_P002	EnsemblPlants:Zm00001d052709_T002	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr4:+:198300956..198313629

Molecular Weight (calculated)

54861.7 Da

IEP (calculated)

7.775

GRAVY (calculated)

-0.504

Length

491 amino acids

Sequence
(BLAST)

001: MLGRLKSLTR SPPSFTSSPG SPPSFVARFA PFSVITAASS TTTPLAPSSP TTFSCSSRIV VKAARRGYIS AAIGDGPGCL SLRCPDPSCS AMVLQGMINE
101: LAKDEDRKKY ARFLLRAYVE GSKKTKWCPA PDCTCAVEFL GDENYDVSCN CMFSFCWNCT EEAHRPVNCE TVSKWILKNS AESENMNWIL ANSKPCPKCK
201: RPIEKNQGCM HMTCTPPCKF EFCWLCLGAW SDHGERTGGF YACNRYESAK KEGVYDETDA RRERAKNSLE RYMHYYERWA SNQTSRQKAQ ADLLKAEKDQ
301: IANLTDIFGI PETQLKFIIE AWSQIIECRR VLKWTYAYGY YLDDKIKSEF FEYLQGEAES GLERLHQCAE KDLQIFLPSV KSDSTETTTP TVAEFGEFRV
401: KLAGLTSVTR NYFENLVQAL EAGLEDVRAT GQAAGTSSTA TSSKKGGTKS KKKQHTAPSS DHTDDGWPCE RCTFLNPPTV DACSVCEKSR Y

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.