Factsheet for Zm00001d048683_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES08939	Sorghum	nucleus	77.44	68.95
Os09t0559000-00	Rice	cytosol	52.99	59.05
TraesCS6D01G402400.1	Wheat	nucleus	52.65	54.61
TraesCS6A01G417200.1	Wheat	nucleus	52.99	54.58
TraesCS6B01G472300.1	Wheat	nucleus	52.82	54.5
HORVU3Hr1G019640.1	Barley	cytosol, peroxisome, plastid	19.49	53.52
HORVU3Hr1G049680.1	Barley	nucleus	28.89	46.56
Os09t0559100-00	Rice	nucleus	15.38	45.69
HORVU5Hr1G089020.2	Barley	nucleus	44.44	42.9
HORVU5Hr1G089940.1	Barley	cytosol	24.1	42.34
Zm00001d003207_P001	Maize	nucleus	37.95	37.69
Zm00001d025750_P011	Maize	extracellular	37.61	37.35
Zm00001d007709_P003	Maize	nucleus	63.59	36.15
Zm00001d052709_P002	Maize	plastid	28.55	34.01
Zm00001d046141_P001	Maize	cytosol	16.24	33.45
Zm00001d031694_P003	Maize	nucleus	36.41	32.57
Zm00001d013716_P002	Maize	nucleus	21.37	23.41
Zm00001d028285_P003	Maize	nucleus	22.05	20.81
Zm00001d048017_P003	Maize	nucleus	21.37	16.34

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	ProteinID:AQK48408.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom
InterPro:IPR001841	InterPro:IPR013083	UniProt:K7UNX4	PFAM:PF01485	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR11685	PANTHER:PTHR11685:SF216	SMART:SM00184	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000221AA20
EnsemblPlantsGene:Zm00001d048683	EnsemblPlants:Zm00001d048683_P001	EnsemblPlants:Zm00001d048683_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr4:+:3233706..3235463

Molecular Weight (calculated)

63812.9 Da

IEP (calculated)

5.122

GRAVY (calculated)

-0.542

Length

585 amino acids

Sequence
(BLAST)

001: MASGGGAVSN KRYRQVSSCT GHDDDSCGTS RRGKTCEAAP RSGRDHDDDG ESADGDGSRG HAQETADDGS SSGDEDYMFE YDDDDDDDCE GGAEQTQADA
101: AACDGEQRYA VLTEDDVRAR QEADTARVAE VLSIPPGFAA VLLRHFKWRV GRVQEEWFAD ERRVRGAAGL PPGQLVPAAR GLRPRVCAIC FDEQPAGQTA
201: SAGCSHYYCN GCWRGYVRAA VGDGPRCLSL RCPDPRCSAP VVRELVDEVL AADDVGRYAR FWLRSYVEES GGRVRWCGGP GCARALESSG GGDAAADVFC
301: VCGYGVCWAC GEEAHRPVSC ATVRAWLLKN SSDSAETANW VMAHTKPCPR CGRPIEKNQG CNHMRCSPPC GHRFCWLCLQ PAGGENHYAC NDLRPHPPAE
401: TGVAGAGAEE KEARRLARAS LERYLYHYER WVSNRAALES VARDTATLER GELEWMARAA DVPATELGFV AEAYRQVAEG RRILRWAHAY GYFLDPERDV
501: TKRGLFDDLQ NQANRWLECL HASAELERKE LFGAGGEAAP VDGDAFRAYR QKVANLTGVT RKFIGNLVRA FETDLSEVVA VIPAN

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.