CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048683_P001	Maize	nucleus	68.95	77.44
Os09t0559000-00	Rice	cytosol	45.66	57.14
EES08942	Sorghum	cytosol	47.64	56.5
OQU83976	Sorghum	cytosol	45.21	55.72
TraesCS6D01G402400.1	Wheat	nucleus	46.73	54.43
TraesCS6A01G417200.1	Wheat	nucleus	46.42	53.7
TraesCS6B01G472300.1	Wheat	nucleus	46.27	53.62
OQU83975	Sorghum	nucleus	47.03	51.76
HORVU3Hr1G019640.1	Barley	cytosol, peroxisome, plastid	16.74	51.64
HORVU3Hr1G049680.1	Barley	nucleus	24.96	45.18
HORVU5Hr1G089940.1	Barley	cytosol	22.22	43.84
Os09t0559100-00	Rice	nucleus	12.94	43.15
KXG36175	Sorghum	nucleus	35.92	42.91
HORVU5Hr1G089020.2	Barley	nucleus	38.81	42.08
EES11042	Sorghum	nucleus	33.33	37.18
EES15269	Sorghum	nucleus	33.64	37.08
EES08947	Sorghum	nucleus	60.58	36.68
EER93787	Sorghum	nucleus	18.57	22.8
EER92613	Sorghum	nucleus	20.4	22.19
EER93790	Sorghum	nucleus	18.26	22.14

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	UniProt:C5Y7I0	InterPro:E3_UB_ligase_RBR	EnsemblPlants:EES08939
ProteinID:EES08939	ProteinID:EES08939.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004674	GO:GO:0004842
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF01485	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF216	SMART:SM00647
EnsemblPlantsGene:SORBI_3005G208900	SUPFAM:SSF57850	UniParc:UPI00081ACAD9	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:69538522..69540988

Molecular Weight (calculated)

70372.9 Da

IEP (calculated)

4.811

GRAVY (calculated)

-0.546

Length

657 amino acids

Sequence
(BLAST)

001: MGSSSDHHGG ACNKRSRNAS SFAEDDDGKG ETSRRRKICE GAPTSGPSGR PRHDGDSGDG AGDSCGGHAQ AAPHGDGPDP DPDPGEEDYM CAYDDCDDDG
101: GAGEEDYICE YDDDDGVGGS EQAQLDDAAP AAACAREERR YVVLTEEDIC ARQEADTAKV AEVLSIPPGF AAVLLRHFKW RVGRVQEEWF TDDRRVRGAV
201: GLPLDPYQLD LVPASRGAGP GPGPRVCGIC FDEFPAGRTA SAGCEHLYCH GCWQGYVRAA VADGPRCLSL RCPDPSCSAP VVRELVDEVL ASAADESGSA
301: DDDGDRYARF WLRSYVEESG GKVRWCGGAG CARALEFLGD AASADADVFC ECGHGVCWSC GEEAHRPVSC GTVRAWLVKN SSDSAETANW VVAHTKPCPK
401: CGRPIEKNQG CNHMRCSPPC GHHFCWLCLQ PAGGANHYAC NDSRAGPAAG ADEEAAAAVA STGTGTAAAK EEQANRRRAR ASLERYLYHY ERWASNRAAL
501: ESAARDMAAL ERGELERMAR AADVPATELA FVAEAYRQVG DGRRVLRWAH AYGYFLDPER DAAKRALFDD LQNQANRWLE CLHAAAELER TDLFGDGKGK
601: KAADAPAVVV DAEAFRAYRQ KVANLTGVTR KFLGNLVRAF ETDLPEVAAA VNPNPAK

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.