Factsheet for HORVU3Hr1G049680.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G089940.1	Barley	cytosol	59.23	64.56
HORVU5Hr1G089020.2	Barley	nucleus	82.92	49.67
TraesCS5A01G361400.1	Wheat	nucleus	79.89	49.07
TraesCS5D01G370300.1	Wheat	nucleus	79.89	48.74
TraesCS5B01G364000.1	Wheat	nucleus	79.34	48.4
HORVU3Hr1G019640.1	Barley	cytosol, peroxisome, plastid	27.55	46.95
HORVU7Hr1G056020.3	Barley	cytosol	30.3	39.01
Os09t0559000-00	Rice	cytosol	49.31	34.1
EES08942	Sorghum	cytosol	46.01	30.14
OQU83976	Sorghum	cytosol	44.08	30.02
KXG36175	Sorghum	nucleus	43.8	28.91
Zm00001d048683_P001	Maize	nucleus	46.56	28.89
HORVU5Hr1G078470.2	Barley	nucleus	42.15	27.42
OQU83975	Sorghum	nucleus	44.9	27.3
HORVU6Hr1G055260.4	Barley	nucleus	43.53	26.83
EES08939	Sorghum	nucleus	45.18	24.96
HORVU7Hr1G056040.5	Barley	nucleus, plastid	44.35	24.25
HORVU2Hr1G085060.3	Barley	cytosol	43.53	23.62
Zm00001d007709_P003	Maize	nucleus	48.21	17.01
HORVU4Hr1G011770.1	Barley	nucleus	24.79	16.76
EES08947	Sorghum	nucleus	47.93	16.04
HORVU4Hr1G066180.1	Barley	nucleus	26.17	15.32
HORVU4Hr1G011910.1	Barley	cytosol, plastid	24.79	14.71
HORVU1Hr1G018020.1	Barley	cytosol	7.16	14.13
HORVU7Hr1G068450.2	Barley	nucleus	6.89	9.77
Os09t0559100-00	Rice	nucleus	4.41	8.12

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	UniProt:A0A287KZT4	ncoils:Coil	InterPro:E3_UB_ligase_RBR	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:HORVU3Hr1G049680
EnsemblPlants:HORVU3Hr1G049680.1	InterPro:IBR_dom	InterPro:IPR001841	PFAM:PF01485	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR11685	PANTHER:PTHR11685:SF216	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000B46E752	InterPro:Znf_RING
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A287KZT4]

Coordinates

chrchr3H:-:350635836..350637811

Molecular Weight (calculated)

41903.7 Da

IEP (calculated)

7.526

GRAVY (calculated)

-0.658

Length

363 amino acids

Sequence
(BLAST)

001: MAVNDATPHL LHLLRSARPR RDAVRRVRPL LLPRVLERLR AHGRRGQRRL LSIRCPDMAC SAAVVCDLAD DVADDKDAKR YGEFLVRSYV EESKRLRWCP
101: AAACDRAVEF DDEKCTVQLD AWCTCGHGFC LACGEEVHRP VSCDTVRVWM EKNRSDSETA KWVLANTKHC PVCRRPIEKN HGCMHMTCSP PCKHQFCWLC
201: LGPWEKHDGG NYNCNRYNEA RAEGKYMEEE LRRSQAKASV DRYLHYYERW GAHERSRQKA LEDVAALGKD GSQREAVAAA FGVVETELDF LEEAFRQVAE
301: CRRMLRWTYA FGYYLDDPSK RDLFEDLQSQ ADKSPELLHE CAEKDSKITY STAYMIKNLQ PDT

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.