CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013716_P002	Maize	nucleus	84.13	85.39
TraesCS4A01G243200.1	Wheat	nucleus	64.21	63.5
TraesCS4B01G071800.1	Wheat	nucleus	64.21	63.39
TraesCS4D01G070600.1	Wheat	nucleus	62.92	63.38
Os03t0625800-01	Rice	cytosol	62.36	62.59
HORVU4Hr1G011910.1	Barley	cytosol, plastid	64.76	57.35
EER93787	Sorghum	nucleus	49.82	50.47
Solyc04g079780.2.1	Tomato	cytosol	40.04	41.57
PGSC0003DMT400043486	Potato	cytosol	39.67	41.27
VIT_18s0001g11740.t01	Wine grape	cytosol	41.7	40.72
PGSC0003DMT400064832	Potato	nucleus	44.28	40.68
Solyc12g089000.1.1	Tomato	nucleus	40.22	40.6
PGSC0003DMT400039948	Potato	nucleus	40.59	40.52
Solyc01g109280.2.1	Tomato	nucleus	44.1	40.51
AT3G27710.1	Thale cress	nucleus	39.85	40.22
VIT_03s0063g02000.t01	Wine grape	nucleus	43.54	40.07
EER92613	Sorghum	nucleus	44.65	40.07
CDX71262	Canola	nucleus	42.8	39.93
CDX75425	Canola	nucleus	43.36	39.76
KRH29521	Soybean	nucleus	42.44	39.66
Bra011524.1-P	Field mustard	nucleus	43.17	39.59
CDY49559	Canola	nucleus	42.44	39.52
Bra001960.1-P	Field mustard	nucleus	42.44	39.52
GSMUA_Achr5P01850_001	Banana	nucleus	39.3	39.52
KRH24517	Soybean	nucleus	42.07	39.31
AT4G34370.1	Thale cress	nucleus	43.17	39.2
CDX69049	Canola	nucleus	43.17	39.2
CDY00148	Canola	nucleus	34.5	38.64
CDY49768	Canola	nucleus	33.95	38.33
AT2G16090.1	Thale cress	nucleus	41.88	38.28
Bra039068.1-P	Field mustard	nucleus	36.53	37.79
CDY20037	Canola	nucleus	36.16	37.4
CDY03991	Canola	nucleus	33.39	37.4
Bra033024.1-P	Field mustard	nucleus	36.16	37.26
AT3G27720.1	Thale cress	nucleus	32.66	35.9
KXG36175	Sorghum	nucleus	24.35	24.0
EES15269	Sorghum	nucleus	25.28	22.99
EES11042	Sorghum	nucleus	24.17	22.24
EES08942	Sorghum	cytosol	21.77	21.3
OQU83975	Sorghum	nucleus	22.69	20.6
OQU83976	Sorghum	cytosol	20.11	20.45
EES08939	Sorghum	nucleus	22.14	18.26
EES08947	Sorghum	nucleus	23.8	11.89

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:8062484	UniProt:C5WS70	InterPro:E3_UB_ligase_RBR
EnsemblPlants:EER93790	ProteinID:EER93790	ProteinID:EER93790.1	GO:GO:0000151	GO:GO:0000209	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436
GO:GO:0042787	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	EnsemblPlantsGene:SORBI_3001G163300
SUPFAM:SSF57850	UniParc:UPI0001A82BEA	RefSeq:XP_002466792.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:13446784..13450277

Molecular Weight (calculated)

60910.5 Da

IEP (calculated)

6.537

GRAVY (calculated)

-0.407

Length

542 amino acids

Sequence
(BLAST)

001: MASDEEGEVC DYFYDDDDAE EDAAAGLEED SSPPPPPPHG ADYWAITQET VFAAQKQDLS TVMNLLNIKK YQARALLIHH RWRIDGIYDS LDKGRECMLR
101: NAGIVLQENN SMVAAGSTTP WRTVTCKVCF EEFSMAAVST MDCGHCFCND CWTGHFHAAV ESGKKQIRCM EVKCSAFCDE NLVLFLLGQK YPDMAKRFNR
201: FLLESYIEDN ASVKWCPSTP NCGHAIRVGT GERYCEVECP CGLSFCFNCM AHAHSPCPCP IWEKWNAKRS EGENIKWILA NTKSCPKCFK AIEKNGGCNL
301: VRCKCGQCMC WLCGGGTGMD HTWTSIAGHS CNRYKEESRG KTADTSREQM ERYKHYHDRF KIHGDSYSVE KQKLGATIAE QVRLLESDKD RPLAIRDGDW
401: LTRAHRRLLV SRQVLSRSYV FAYYMFGGGC QLRTLPVPAA RRAGASLLGV ARNLFEDQQE QLEQHVEHLS RSLAEAAVVA GTPEAEIVRQ KQAAVTLAKT
501: VERLCGEMYK CIQDELLTLL VEPMTIAAYR PDGPDRAREL AA

Best Arabidopsis Sequence Match ( AT4G34370.1 )
(BLAST)

001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN

Arabidopsis Description

ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.