Factsheet for Bra001960.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49559	Canola	nucleus	99.48	99.48
CDX71262	Canola	nucleus	95.7	95.87
AT2G16090.1	Thale cress	nucleus	83.16	81.62
Bra011524.1-P	Field mustard	nucleus	73.88	72.76
VIT_03s0063g02000.t01	Wine grape	nucleus	70.96	70.12
PGSC0003DMT400064832	Potato	nucleus	68.73	67.8
Solyc01g109280.2.1	Tomato	nucleus	68.38	67.46
KRH24517	Soybean	nucleus	67.01	67.24
KRH29521	Soybean	nucleus	66.67	66.9
VIT_18s0001g11740.t01	Wine grape	cytosol	60.31	63.24
Bra033024.1-P	Field mustard	nucleus	53.78	59.51
Bra039068.1-P	Field mustard	nucleus	53.44	59.35
EER92613	Sorghum	nucleus	61.51	59.27
PGSC0003DMT400043486	Potato	cytosol	52.75	58.93
Os03t0233500-01	Rice	nucleus	61.68	58.66
Solyc04g079780.2.1	Tomato	cytosol	52.58	58.62
TraesCS4A01G061500.1	Wheat	nucleus	62.03	58.23
HORVU4Hr1G066180.1	Barley	nucleus	61.86	58.06
TraesCS4D01G238400.2	Wheat	nucleus	61.86	58.06
TraesCS4B01G236900.1	Wheat	nucleus	61.86	58.06
GSMUA_Achr6P23120_001	Banana	nucleus	63.75	57.7
Zm00001d028285_P003	Maize	nucleus	60.82	57.1
PGSC0003DMT400039948	Potato	nucleus	52.41	56.17
Solyc12g089000.1.1	Tomato	nucleus	51.55	55.87
HORVU1Hr1G018020.1	Barley	cytosol	17.53	55.43
GSMUA_Achr5P01850_001	Banana	nucleus	47.42	51.21
HORVU7Hr1G068450.2	Barley	nucleus	21.82	49.61
Zm00001d048017_P003	Maize	nucleus	60.82	46.27
TraesCS4A01G243200.1	Wheat	nucleus	41.58	44.16
TraesCS4B01G071800.1	Wheat	nucleus	41.58	44.08
TraesCS4D01G070400.1	Wheat	nucleus	40.38	44.01
TraesCS4D01G070600.1	Wheat	nucleus	40.55	43.87
Os03t0625800-01	Rice	cytosol	40.38	43.52
TraesCS4B01G071700.1	Wheat	nucleus	40.03	43.07
EER93790	Sorghum	nucleus	39.52	42.44
Zm00001d013716_P002	Maize	nucleus	38.83	42.32
Os03t0625933-00	Rice	nucleus	23.37	41.34
TraesCS4D01G069600.1	Wheat	nucleus	37.29	40.64
TraesCS4A01G244200.1	Wheat	nucleus	36.94	40.11
EER93787	Sorghum	nucleus	36.6	39.81
TraesCS4B01G070800.1	Wheat	nucleus	36.43	39.55
HORVU4Hr1G011910.1	Barley	cytosol, plastid	41.41	39.38
HORVU4Hr1G011770.1	Barley	nucleus	35.91	38.92
Os03t0626100-01	Rice	nucleus	35.91	36.67
Bra021726.1-P	Field mustard	nucleus	24.57	28.49
Bra022845.1-P	Field mustard	nucleus	26.12	27.49
Bra022479.1-P	Field mustard	nucleus	26.46	27.3
Bra015463.1-P	Field mustard	nucleus	26.12	27.24
Bra006112.1-P	Field mustard	nucleus	24.91	27.15
Bra023338.1-P	Field mustard	nucleus	25.43	26.81
Bra022865.1-P	Field mustard	nucleus	23.2	25.91
Bra021742.1-P	Field mustard	nucleus	22.16	25.9
Bra005642.1-P	Field mustard	nucleus	22.51	25.69
Bra015460.1-P	Field mustard	nucleus	18.9	21.15
Bra018221.1-P	Field mustard	cytosol	16.15	20.94
Bra038658.1-P	Field mustard	nucleus	14.09	18.98
Bra028646.1-P	Field mustard	nucleus	15.46	18.95
Bra038659.1-P	Field mustard	nucleus	16.15	18.76
Bra029204.1-P	Field mustard	nucleus	13.57	17.75
Bra038276.1-P	Field mustard	cytosol	16.84	16.25
Bra009365.1-P	Field mustard	cytosol	17.18	14.95
Bra038660.1-P	Field mustard	cytosol	3.95	12.43

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra001960	EnsemblPlants:Bra001960.1	EnsemblPlants:Bra001960.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4CCN0	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI00025444C2
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT2G16090 (E=1e-262) ATARI12, ARI12 | zinc finger protein-related

Coordinates

chrA10:+:12725325..12727902

Molecular Weight (calculated)

66819.6 Da

IEP (calculated)

5.411

GRAVY (calculated)

-0.569

Length

582 amino acids

Sequence
(BLAST)

001: MDDYLSGEEE DDYYYTSDQE SLEGLDHDQS NLHPLSSSGN TAKVITKESL LAAQREDLRR VMELLSLKEH HARTLLIHHR WDVEKLFAVL VEKGKDCLFS
101: GAGLTLAGDD PTFSPSSSMM MTCDICVEDV EGHHHMTRMD CGHCFCNNCW AAHFTVKINE GQSKRIRCMA YKCNAICDED VVRSLVSETQ PDLAEKFDRF
201: LIESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG FQFCFSCSYQ AHSPCSCSMW ELWRKKCHDE SETVNWITVH TKPCPKCYKP VEKNGGCNLV
301: TCICGQSFCW LCGGATGRDH TWSSISGHSC GRYQEDKEKQ LERAKRDLYR YMHYHNRYKA HIDSSKLEDR LSDTILEKVS ILEKRQLQFK DFSWVTSGLH
401: RLFRSRRVLS YSYPFAFYMF GEELFKDEMS AEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VTQIRIQVIN LSVAVDTLCK TMYECIENEL
501: LGSLQVGIHN IAPYSSNGIE RASDFISSRE AGGEKCQASN SGCSSEDTSC SPRKRPRKEG IYRNNQTTLL DLNLPADVIE RK

Best Arabidopsis Sequence Match ( AT2G16090.4 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGWTSR LDQALESGKS EDTSCSSGKR ARIDESYRNS QTTLLDLNLP AEAIERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.