Factsheet for Bra021742.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68344	Canola	nucleus	98.39	98.39
Bra005642.1-P	Field mustard	nucleus	69.88	68.24
Bra022865.1-P	Field mustard	nucleus	71.08	67.95
AT2G31780.1	Thale cress	nucleus	58.03	65.24
AT2G31760.1	Thale cress	nucleus	66.27	64.2
AT2G31770.1	Thale cress	nucleus	67.07	61.51
Bra021726.1-P	Field mustard	nucleus	58.84	58.37
Bra022845.1-P	Field mustard	nucleus	63.86	57.5
Bra015463.1-P	Field mustard	nucleus	62.85	56.09
Bra006112.1-P	Field mustard	nucleus	58.23	54.31
Bra023338.1-P	Field mustard	nucleus	58.23	52.54
PGSC0003DMT400069483	Potato	nucleus	58.43	52.43
Solyc06g073340.2.1	Tomato	nucleus	57.83	52.36
GSMUA_Achr9P07970_001	Banana	nucleus	56.83	51.27
GSMUA_Achr6P28580_001	Banana	nucleus	57.23	50.89
VIT_05s0102g00160.t01	Wine grape	nucleus	59.24	50.26
Zm00001d003207_P001	Maize	nucleus	59.24	50.08
EES11042	Sorghum	nucleus	59.24	50.08
Zm00001d025750_P011	Maize	extracellular	58.84	49.75
TraesCS2B01G368000.2	Wheat	nucleus	58.84	49.75
Os04t0492100-01	Rice	nucleus	46.99	49.58
TraesCS2D01G348000.2	Wheat	nucleus	58.63	49.58
TraesCS2A01G349600.1	Wheat	nucleus	58.63	49.58
KRH23186	Soybean	nucleus	58.63	49.58
GSMUA_Achr8P28870_001	Banana	nucleus	58.43	49.57
KRH29654	Soybean	nucleus	58.03	49.32
Bra022479.1-P	Field mustard	nucleus	55.82	49.29
KRH10154	Soybean	nucleus	58.23	49.24
KRH24651	Soybean	nucleus	57.83	49.15
HORVU6Hr1G055260.4	Barley	nucleus	57.83	48.9
TraesCS6B01G245900.2	Wheat	nucleus	57.43	48.72
TraesCS6A01G216900.1	Wheat	nucleus	57.43	48.56
GSMUA_Achr3P16920_001	Banana	nucleus	57.23	48.55
TraesCS6D01G198600.5	Wheat	nucleus	57.23	48.39
Zm00001d046141_P001	Maize	cytosol	23.49	41.2
HORVU2Hr1G085060.3	Barley	cytosol	54.82	40.81
Bra015460.1-P	Field mustard	nucleus	37.15	35.58
Bra018221.1-P	Field mustard	cytosol	26.31	29.18
Bra039068.1-P	Field mustard	nucleus	26.71	25.38
Bra038658.1-P	Field mustard	nucleus	21.49	24.77
Bra028646.1-P	Field mustard	nucleus	23.09	24.21
Bra038659.1-P	Field mustard	nucleus	24.1	23.95
Bra033024.1-P	Field mustard	nucleus	24.7	23.38
Bra011524.1-P	Field mustard	nucleus	26.71	22.5
Bra001960.1-P	Field mustard	nucleus	25.9	22.16
Bra038276.1-P	Field mustard	cytosol	26.31	21.72
Bra029204.1-P	Field mustard	nucleus	18.88	21.12
Bra038660.1-P	Field mustard	cytosol	7.43	20.0
Bra009365.1-P	Field mustard	cytosol	25.1	18.68

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra021742	EnsemblPlants:Bra021742.1	EnsemblPlants:Bra021742.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4DYZ5	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI0002544D4B
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

AT2G31770 (E=1e-191) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA04:+:14206040..14207841

Molecular Weight (calculated)

57715.7 Da

IEP (calculated)

4.743

GRAVY (calculated)

-0.556

Length

498 amino acids

Sequence
(BLAST)

001: MDYSDDDVML DIESGEDHLY SDDVDPGFAE EDNDNDSASQ LSYVILKEED IHEHQRTDIE QVSTLLSISQ AEAIVLLLHY QWNASKVEDE WFTDEERVRK
101: TVGIVKEPVV DLNQMNIICG ICFESYFQKD IATVSCGHPY CMTCWNGYIT AKITGGPGCL MVTCPEPSCS AVVGQDMIDK LISNEEFKEK YYRYFFRSYV
201: ESSGKKIKWC PSPGCEYAVD FGKGSENYDV SCLCSNDFCW NCSEDAHRPV DCDTVAKWIF KNNDESENTT WILANTKLCP RCKRHIEKNQ GCNHMTCSAP
301: CRFQFCWICL RAYPCPEDCN KFKGDDEAEN KREMAKTALH RYMHYYERWV SNQSSRLTAK RDLEKLQSVQ LKQLSDKHST PETQLQFIVD AWLQIIECRR
401: VLKWTFAYGY YLPQHEHAKK QFFEYLQAEA QVGLERLHDC AEVEFKQFVS ETEEPSKDFS DFRRKLTGLT IVTKTYFENL VKALENGLAD VESTMRAK

Best Arabidopsis Sequence Match ( AT2G31770.1 )
(BLAST)

001: MDFSDDDMID NKSGEENYSY GGGNESDDYN DVVDTIIPSE KSYVILKEED ILKLQRDDIE RVSSILSLSQ VEVIVLLLHY NWCVSKVEDE WFTDEERIRK
101: AVGLLKEPVV DFNGGEKDKK CRKVNIQCGI CFESYTREEI ARVSCGHPYC KTCWAGYITT KIEDGPGCLR VKCPEPSCSA AVGKDMIEDV TETKVNEKYS
201: RYILRSYVED GKKIKWCPSP GCGYAVEFGG SESSSYDVSC LCSYRFCWNC SEDAHSPVDC DTVSKWIFKN QDESENKNWM LANSKPCPEC KRPIEKNDGC
301: NHMTCSAPCG HEFCWICLKA YRRHSGACNR FVVEQAESKR ALLQSEIKRY THYYVRWAEN QSSRLKAMRD LEKLQSVQLK ELSDNQCTSE TQLQFTVDAW
401: LQIIECRRVL KWTYAYGYYL QDLPKRKFFE YLQGEAESGL ERLHHCAENE LKQFFIKSED PSDTFNAFRM KLTGLTTVTK TYFENLVKAL ENGLVDVTHN
501: EFPPDNETKS TQEKYEEYQD YEDDFLETQR LYDEALLSGC YYD

Arabidopsis Description

ARI9Probable E3 ubiquitin-protein ligase ARI9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.