Factsheet for Bra006112.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78438	Canola	nucleus	91.57	98.79
Bra015463.1-P	Field mustard	nucleus	66.29	63.44
Bra023338.1-P	Field mustard	nucleus	65.17	63.04
Bra021726.1-P	Field mustard	nucleus	57.87	61.55
Bra022845.1-P	Field mustard	nucleus	62.55	60.4
Bra021742.1-P	Field mustard	nucleus	54.31	58.23
Solyc06g073340.2.1	Tomato	nucleus	59.36	57.64
PGSC0003DMT400069483	Potato	nucleus	58.99	56.76
VIT_05s0102g00160.t01	Wine grape	nucleus	60.3	54.86
Os04t0492100-01	Rice	nucleus	47.94	54.24
GSMUA_Achr9P07970_001	Banana	nucleus	55.81	53.99
Bra005642.1-P	Field mustard	nucleus	51.12	53.53
KRH10154	Soybean	nucleus	58.8	53.31
KRH23186	Soybean	nucleus	58.61	53.14
Bra022479.1-P	Field mustard	nucleus	55.99	53.01
Zm00001d003207_P001	Maize	nucleus	58.43	52.97
TraesCS2B01G368000.2	Wheat	nucleus	58.43	52.97
EES11042	Sorghum	nucleus	58.43	52.97
TraesCS2D01G348000.2	Wheat	nucleus	58.24	52.8
TraesCS2A01G349600.1	Wheat	nucleus	58.24	52.8
GSMUA_Achr6P28580_001	Banana	nucleus	55.24	52.68
TraesCS6B01G245900.2	Wheat	nucleus	57.68	52.47
Zm00001d025750_P011	Maize	extracellular	57.87	52.46
KRH29654	Soybean	nucleus	57.49	52.39
TraesCS6D01G198600.5	Wheat	nucleus	57.68	52.29
TraesCS6A01G216900.1	Wheat	nucleus	57.68	52.29
KRH24651	Soybean	nucleus	57.3	52.22
HORVU6Hr1G055260.4	Barley	nucleus	57.49	52.12
Bra022865.1-P	Field mustard	nucleus	50.75	52.02
GSMUA_Achr8P28870_001	Banana	nucleus	57.12	51.96
GSMUA_Achr3P16920_001	Banana	nucleus	56.18	51.11
HORVU2Hr1G085060.3	Barley	cytosol	55.24	44.1
Zm00001d046141_P001	Maize	cytosol	23.03	43.31
Bra015460.1-P	Field mustard	nucleus	34.64	35.58
Bra018221.1-P	Field mustard	cytosol	25.47	30.29
Bra038658.1-P	Field mustard	nucleus	20.79	25.69
Bra039068.1-P	Field mustard	nucleus	25.09	25.57
Bra028646.1-P	Field mustard	nucleus	22.66	25.47
Bra001960.1-P	Field mustard	nucleus	27.15	24.91
Bra033024.1-P	Field mustard	nucleus	24.16	24.52
Bra038659.1-P	Field mustard	nucleus	22.85	24.35
Bra029204.1-P	Field mustard	nucleus	20.04	24.04
Bra011524.1-P	Field mustard	nucleus	26.22	23.69
Bra038276.1-P	Field mustard	cytosol	25.47	22.55
Bra009365.1-P	Field mustard	cytosol	23.78	18.98
Bra038660.1-P	Field mustard	cytosol	6.18	17.84

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra006112	EnsemblPlants:Bra006112.1	EnsemblPlants:Bra006112.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4CPH4	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000253F95F
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT1G05890 (E=6e-198) | zinc finger protein-related

Coordinates

chrA03:-:2073048..2074652

Molecular Weight (calculated)

60761.0 Da

IEP (calculated)

4.639

GRAVY (calculated)

-0.561

Length

534 amino acids

Sequence
(BLAST)

001: MDSDDYYMES GEEDLYSDGA GDYNDGADHD DDTDDTGFLG DDDDDSSMIS SPRSHMNYVV LKEEDIRRQQ ESDIAQVSMI LSLSKVEASV LLLHYHWNVG
101: KVNDEWFADE RRVRTSAGLE GGSVIVPYSE GGKVACGICF DYFCRIDIVP IMCGHAFCST CWTSYISIAI NDGPGCLMQK CPEPSCPVAV GRDMVEKLAS
201: FEAKDKYDRY FLRSYVEENK KTKWCPAPGC EHAIEFSATG TGSSYDVSCL CSHSFCWNCT QDAHRPVDCD RVSQWIRKNS VEAENTKWIL DNSKPCPKCK
301: RPIEKNRGCM HMSCTPPCRY QFCWLCLGAW SEHGEGTGGP YTCNRYSKAK GQGLHDEAEM KREMAKDSLE KYTHYYERWA GNQTSRQKAI GDLEKFLSVD
401: VMKLSDKQCI PETELGFITD AWLQIIECRR VLKWTYAYGY YLLESEQEKR QFFEYMQGEA ESGLERLHKC VELESEVFQY PEDTPKQDFK GFRTKLTTLT
501: SVTKTHFETL VKALENDLSD VGFASDVEVT TLAL

Best Arabidopsis Sequence Match ( AT1G05890.1 )
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKSNYVVLKE EDIRRHQNDD VGRVSAVLSI TDVEASTLLL HYHWSVSKVN
101: DEWFADEERV RRTVGILEGP VVTTPDGREF TCGICFDSYT LEEIVSVSCG HPFCATCWTG YISTTINDGP GCLMLKCPDP SCPAAIGRDM IDKLASKEDK
201: EKYYRYFLRS YVEVNREMKW CPAPGCEHAI DFAGGTESYD VSCLCSHSFC WNCTEEAHRP VDCDTVGKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: HGCMHMTCTP PCKFEFCWLC LNAWTEHGER TGGFYACNRY EAAKQEGLYD EAERRREMAK NSLERYTHYY ERWASNQVSR QKAMGDLQKM QSEKLGKLSD
401: IQCTPESQLK FIAEAWLQII ECRRVLKWTY AYGYYLQDHA KKPFFEYLQG EAESGLERLH KCVEKDIEVF ELAEGPSEEF NHFRTKLTGL TSITKTFFEN
501: LVKALENGLA DVDSQAASSK PANSKPSSKT KGGGKGKGSS KNGGSSRNPD GN

Arabidopsis Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.