Factsheet for Bra022865.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84759	Canola	nucleus	100.0	100.0
Bra021742.1-P	Field mustard	nucleus	67.95	71.08
Bra005642.1-P	Field mustard	nucleus	67.75	69.22
AT2G31780.1	Thale cress	nucleus	54.89	64.56
AT2G31760.1	Thale cress	nucleus	62.0	62.84
AT2G31770.1	Thale cress	nucleus	62.96	60.41
Bra021726.1-P	Field mustard	nucleus	55.09	57.17
Bra022845.1-P	Field mustard	nucleus	59.5	56.06
Bra015463.1-P	Field mustard	nucleus	58.73	54.84
Solyc06g073340.2.1	Tomato	nucleus	54.32	51.45
PGSC0003DMT400069483	Potato	nucleus	54.13	50.81
Bra006112.1-P	Field mustard	nucleus	52.02	50.75
Bra023338.1-P	Field mustard	nucleus	53.17	50.18
Bra022479.1-P	Field mustard	nucleus	53.55	49.47
GSMUA_Achr9P07970_001	Banana	nucleus	51.63	48.73
KRH23186	Soybean	nucleus	55.09	48.73
VIT_05s0102g00160.t01	Wine grape	nucleus	54.89	48.72
Os04t0492100-01	Rice	nucleus	43.95	48.52
KRH10154	Soybean	nucleus	54.51	48.22
GSMUA_Achr6P28580_001	Banana	nucleus	51.82	48.21
GSMUA_Achr8P28870_001	Banana	nucleus	54.13	48.04
HORVU6Hr1G055260.4	Barley	nucleus	54.13	47.88
Zm00001d003207_P001	Maize	nucleus	54.13	47.88
EES11042	Sorghum	nucleus	54.13	47.88
TraesCS6B01G245900.2	Wheat	nucleus	53.93	47.87
KRH24651	Soybean	nucleus	53.74	47.78
Zm00001d025750_P011	Maize	extracellular	53.93	47.71
TraesCS6A01G216900.1	Wheat	nucleus	53.93	47.71
TraesCS2B01G368000.2	Wheat	nucleus	53.74	47.54
TraesCS6D01G198600.5	Wheat	nucleus	53.74	47.54
KRH29654	Soybean	nucleus	53.36	47.44
TraesCS2A01G349600.1	Wheat	nucleus	53.55	47.37
TraesCS2D01G348000.2	Wheat	nucleus	53.55	47.37
GSMUA_Achr3P16920_001	Banana	nucleus	52.98	47.02
Zm00001d046141_P001	Maize	cytosol	21.5	39.44
HORVU2Hr1G085060.3	Barley	cytosol	50.48	39.31
Bra015460.1-P	Field mustard	nucleus	35.51	35.58
Bra018221.1-P	Field mustard	cytosol	24.38	28.29
Bra038658.1-P	Field mustard	nucleus	20.92	25.23
Bra039068.1-P	Field mustard	nucleus	25.34	25.19
Bra028646.1-P	Field mustard	nucleus	22.46	24.63
Bra038659.1-P	Field mustard	nucleus	23.61	24.55
Bra001960.1-P	Field mustard	nucleus	25.91	23.2
Bra033024.1-P	Field mustard	nucleus	23.42	23.19
Bra011524.1-P	Field mustard	nucleus	26.3	23.18
Bra029204.1-P	Field mustard	nucleus	18.81	22.02
Bra038276.1-P	Field mustard	cytosol	24.38	21.06
Bra038660.1-P	Field mustard	cytosol	7.1	20.0
Bra009365.1-P	Field mustard	cytosol	23.8	18.54

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra022865	EnsemblPlants:Bra022865.1	EnsemblPlants:Bra022865.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR001878
InterPro:IPR013083	UniProt:M4E265	PFAM:PF00097	PFAM:PF01485	ScanProsite:PS00518	PFscan:PS50089
PFscan:PS50158	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI0002540331
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_CCHC	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

AT2G31770 (E=7e-186) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:+:7462890..7464576

Molecular Weight (calculated)

60146.5 Da

IEP (calculated)

6.084

GRAVY (calculated)

-0.701

Length

521 amino acids

Sequence
(BLAST)

001: MDYSDDDGMV DTDSGEESLL SDNQVDSDYE FTDQDVDNAS TSKRSQISYF KEEDVRKHQR TDIEQVSTVL SISQVEAIVL LLHYQWNVSK VEDEWFTDEK
101: KVRELVGMLK EPVVDLNDRE VNIECGICFD SYTQKEVTTL SCGHPYCNVC WTGYITTTIN DGPGCLTVKC PEPSCSAVTA CQYMVDKVIT DKELKEKYYR
201: YFVRSYVEAS GNKIKWCPSP GCEYAIDFAS GSRSEHYDVS CLCSYEFCWN CGEDAHRPVD CDTVSKWISK NTDESENTNW ILANTKPCPN CKRQIEKSMG
301: CNHMGCSICK HSFCWNCLGP MKGHRNCHKF KGGNETDVKR KRAKRAIDRY MHYYERWASN QSSRLIAMAD LKKLQSVQLK WLSIRQGTTE SQLQFTVEAW
401: RQIIECRRVL KWTYAYGYYL PEEEQTKKEF FEYLQGEAEA GLERLHHCAE EELKHFVFET QDSSKNFGDF RRKLTGLTEA TKTYFENLVK ALENGLADVA
501: LSESSKSKTK SKPATKRRKL K

Best Arabidopsis Sequence Match ( AT2G31770.1 )
(BLAST)

001: MDFSDDDMID NKSGEENYSY GGGNESDDYN DVVDTIIPSE KSYVILKEED ILKLQRDDIE RVSSILSLSQ VEVIVLLLHY NWCVSKVEDE WFTDEERIRK
101: AVGLLKEPVV DFNGGEKDKK CRKVNIQCGI CFESYTREEI ARVSCGHPYC KTCWAGYITT KIEDGPGCLR VKCPEPSCSA AVGKDMIEDV TETKVNEKYS
201: RYILRSYVED GKKIKWCPSP GCGYAVEFGG SESSSYDVSC LCSYRFCWNC SEDAHSPVDC DTVSKWIFKN QDESENKNWM LANSKPCPEC KRPIEKNDGC
301: NHMTCSAPCG HEFCWICLKA YRRHSGACNR FVVEQAESKR ALLQSEIKRY THYYVRWAEN QSSRLKAMRD LEKLQSVQLK ELSDNQCTSE TQLQFTVDAW
401: LQIIECRRVL KWTYAYGYYL QDLPKRKFFE YLQGEAESGL ERLHHCAENE LKQFFIKSED PSDTFNAFRM KLTGLTTVTK TYFENLVKAL ENGLVDVTHN
501: EFPPDNETKS TQEKYEEYQD YEDDFLETQR LYDEALLSGC YYD

Arabidopsis Description

ARI9Probable E3 ubiquitin-protein ligase ARI9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.