Factsheet for GSMUA_Achr6P28580_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07970_001	Banana	nucleus	86.25	87.5
GSMUA_Achr8P28870_001	Banana	nucleus	88.39	84.33
GSMUA_Achr3P16920_001	Banana	nucleus	86.61	82.62
Os04t0492100-01	Rice	nucleus	65.71	77.97
EES11042	Sorghum	nucleus	80.36	76.4
Zm00001d003207_P001	Maize	nucleus	79.46	75.55
Zm00001d025750_P011	Maize	extracellular	79.46	75.55
TraesCS2D01G348000.2	Wheat	nucleus	78.93	75.04
TraesCS2A01G349600.1	Wheat	nucleus	78.93	75.04
TraesCS2B01G368000.2	Wheat	nucleus	78.93	75.04
HORVU6Hr1G055260.4	Barley	nucleus	76.96	73.17
TraesCS6B01G245900.2	Wheat	nucleus	76.61	73.08
TraesCS6A01G216900.1	Wheat	nucleus	76.25	72.5
TraesCS6D01G198600.5	Wheat	nucleus	76.07	72.33
VIT_05s0102g00160.t01	Wine grape	nucleus	75.71	72.23
KRH23186	Soybean	nucleus	75.18	71.48
Bra021726.1-P	Field mustard	nucleus	63.93	71.31
KRH10154	Soybean	nucleus	74.82	71.14
Solyc06g073340.2.1	Tomato	nucleus	69.64	70.91
PGSC0003DMT400069483	Potato	nucleus	69.46	70.09
KRH29654	Soybean	nucleus	73.04	69.8
AT2G31510.1	Thale cress	nucleus	70.0	69.75
KRH24651	Soybean	nucleus	72.5	69.28
CDY19083	Canola	nucleus	67.86	68.47
CDY15392	Canola	nucleus	68.04	68.4
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	62.5	68.36
Bra022845.1-P	Field mustard	nucleus	67.32	68.17
CDX84781	Canola	nucleus	67.32	68.05
CDY23938	Canola	nucleus	66.79	67.15
CDY47704	Canola	nucleus	66.43	66.67
Bra015463.1-P	Field mustard	nucleus	66.25	66.49
CDX86547	Canola	nucleus	65.71	66.43
CDY10162	Canola	nucleus	65.71	66.31
CDY63791	Canola	nucleus	65.0	65.82
HORVU2Hr1G085060.3	Barley	cytosol	73.75	61.73
AT1G05890.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	64.64	60.94
CDY34490	Canola	cytosol	12.68	57.72
CDY68344	Canola	nucleus	51.25	57.63
Bra021742.1-P	Field mustard	nucleus	50.89	57.23
CDY68345	Canola	cytosol	44.11	56.26
CDX70415	Canola	nucleus	52.68	56.19
CDX79440	Canola	cytosol	17.14	56.14
Bra023338.1-P	Field mustard	nucleus	54.64	55.43
Bra006112.1-P	Field mustard	nucleus	52.68	55.24
CDX91196	Canola	nucleus	50.0	55.01
CDX78438	Canola	nucleus	48.57	54.95
CDY61443	Canola	nucleus	52.5	54.44
Bra005642.1-P	Field mustard	nucleus	48.75	53.53
AT2G31780.1	Thale cress	nucleus	42.32	53.5
AT2G31760.1	Thale cress	nucleus	48.21	52.53
CDY15373	Canola	nucleus	50.89	52.1
CDY42068	Canola	nucleus	42.32	51.86
CDX84759	Canola	nucleus	48.21	51.82
Bra022865.1-P	Field mustard	nucleus	48.21	51.82
AT2G31770.1	Thale cress	nucleus	50.0	51.57
Zm00001d046141_P001	Maize	cytosol	26.07	51.41
CDY15374	Canola	nucleus	51.07	49.91
CDX79439	Canola	nucleus	28.93	49.54
CDY34512	Canola	cytosol, nucleus, plastid	24.29	46.26
GSMUA_Achr5P01850_001	Banana	nucleus	27.32	28.39
GSMUA_Achr6P23120_001	Banana	nucleus	26.61	23.17

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr6G28580_001	EnsemblPlants:GSMUA_Achr6P28580_001
EnsemblPlants:GSMUA_Achr6T28580_001	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR001876	InterPro:IPR013083	UniProt:M0TB03
PFAM:PF01485	ScanProsite:PS01358	PFscan:PS50089	PFscan:PS50199	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177
SMART:SM00547	SMART:SM00647	SUPFAM:SSF57850	SUPFAM:SSF90209	UniParc:UPI000295271E	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

Probable E3 ubiquitin-protein ligase ARI7 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28580_001]

Coordinates

chr6:+:28926617..28939334

Molecular Weight (calculated)

63937.4 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.654

Length

560 amino acids

Sequence
(BLAST)

001: MGSEEDMHDA NDVQSVEDDF YTGETGMGSE DDDYNFGDNY SDDSEDVTSH RQQQNYTILS EADIRQHQDE NINRVSTVLS IPRYAACILL RHYNWSISRV
101: HDEWFADEEH VRKAVGLLDR TVEILNAREL TCGICFENYP CGRMSSASCG HPFCGACWRG YISTSISDGP GCLMLRCPDP SCGAAVGRNM IDVLTTGEDK
201: EKYSRYLLRS YVEDNRKIKW CPAPGCEFAV EFVIGSGSYD VCCSCSYSFC WNCAEEAHRP VDCATVAKWI LKNSAESENM NWILANSKPC PKCKRPIEKN
301: QGCMHITCTP PCKFEFCWLC LGPWSEHGER TGGFYACNRY ESAKQEGAYD ESERRREMAK NSLERYTHYY ERWATNQSSR QKALADLHSM QTEKLEKLSD
401: TQSQPESQLK FIIEAWLQIV ECRRVLKWTY AYGYYLPEHE HAKRQFFEYL QGEAESGLER LHQCAEKELQ VYLDAEGPMT DFNDFRTKLA GLTSVTKNYF
501: ENLVRALETG LKDIKAVAGS SSGSGAPSRS FDDGNLWSCD RCTYANPRST TTCQMCEHHR

Best Arabidopsis Sequence Match ( AT1G65430.1 )
(BLAST)

001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR

Arabidopsis Description

ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.