Factsheet for AT1G05890.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, nucleus
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86547	Canola	nucleus	76.09	81.59
CDY63791	Canola	nucleus	75.08	80.65
CDY10162	Canola	nucleus	75.25	80.54
CDY47704	Canola	nucleus	75.42	80.29
Bra015463.1-P	Field mustard	nucleus	75.42	80.29
AT2G31510.1	Thale cress	nucleus	71.89	75.98
Solyc06g073340.2.1	Tomato	nucleus	62.29	67.27
PGSC0003DMT400069483	Potato	nucleus	62.29	66.67
Os04t0492100-01	Rice	nucleus	52.36	65.89
KRH23186	Soybean	nucleus	64.98	65.53
VIT_05s0102g00160.t01	Wine grape	nucleus	64.65	65.42
KRH10154	Soybean	nucleus	64.65	65.2
KRH24651	Soybean	nucleus	63.8	64.68
GSMUA_Achr6P28580_001	Banana	nucleus	60.94	64.64
KRH29654	Soybean	nucleus	63.64	64.51
GSMUA_Achr9P07970_001	Banana	nucleus	59.93	64.49
GSMUA_Achr8P28870_001	Banana	nucleus	62.79	63.54
GSMUA_Achr3P16920_001	Banana	nucleus	62.29	63.03
EES11042	Sorghum	nucleus	62.46	62.99
AT1G65430.1	Thale cress	nucleus	60.1	62.96
Zm00001d025750_P011	Maize	extracellular	62.29	62.82
Zm00001d003207_P001	Maize	nucleus	62.12	62.65
TraesCS6B01G245900.2	Wheat	nucleus	61.62	62.35
TraesCS6D01G198600.5	Wheat	nucleus	61.78	62.31
HORVU6Hr1G055260.4	Barley	nucleus	61.78	62.31
TraesCS6A01G216900.1	Wheat	nucleus	61.62	62.14
TraesCS2D01G348000.2	Wheat	nucleus	61.45	61.97
TraesCS2B01G368000.2	Wheat	nucleus	61.45	61.97
TraesCS2A01G349600.1	Wheat	nucleus	61.45	61.97
AT2G31780.1	Thale cress	nucleus	44.44	59.59
AT2G31760.1	Thale cress	nucleus	50.84	58.75
AT2G31770.1	Thale cress	nucleus	51.18	55.99
HORVU2Hr1G085060.3	Barley	cytosol	58.25	51.72
Zm00001d046141_P001	Maize	cytosol	23.06	48.24
AT1G05880.2	Thale cress	cytosol	33.67	40.32
AT3G27710.1	Thale cress	nucleus	24.92	27.56
AT4G34370.1	Thale cress	nucleus	26.43	26.3
AT3G27720.1	Thale cress	nucleus	21.72	26.17
AT2G16090.1	Thale cress	nucleus	25.93	25.97
AT5G63750.1	Thale cress	nucleus	22.9	25.37
AT5G63760.2	Thale cress	nucleus	18.52	24.34
AT5G08730.1	Thale cress	cytosol	20.37	24.2
AT5G63730.1	Thale cress	cytosol	20.54	24.11

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:837099	ProteinID:AEE27913.1	Symbol:ARI5
ArrayExpress:AT1G05890	EnsemblPlantsGene:AT1G05890	RefSeq:AT1G05890	TAIR:AT1G05890	RefSeq:AT1G05890-TAIR-G	EnsemblPlants:AT1G05890.2
TAIR:AT1G05890.2	Unigene:At.42364	ncoils:Coil	InterPro:E3_UB_ligase_RBR	UniProt:F4IAE4	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005575	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	RefSeq:NP_001184920.1
PFAM:PF01485	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50089
PANTHER:PTHR11685	PANTHER:PTHR11685:SF177	SMART:SM00647	SUPFAM:SSF57850	TMHMM:TMhelix	UniParc:UPI0001E92C50
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

ARI5RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IAE4]

Coordinates

chr1:+:1779256..1784427

Molecular Weight (calculated)

67385.0 Da

IEP (calculated)

5.009

GRAVY (calculated)

-0.502

Length

594 amino acids

Sequence
(BLAST)

001: MDSDDDMHDM DSVDYDYYSG GTYDDNDSDE TDFGFGEADT DDAAIIASYR SKVASILVSC FGLLLQRWRM LEAVFCLFVC FFFFGLRLLL YSCNSNYVVL
101: KEEDIRRHQN DDVGRVSAVL SITDVEASTL LLHYHWSVSK VNDEWFADEE RVRRTVGILE GPVVTTPDGR EFTCGICFDS YTLEEIVSVS CGHPFCATCW
201: TGYISTTIND GPGCLMLKCP DPSCPAAIGR DMIDKLASKE DKEKYYRYFL RSYVEVNREM KWCPAPGCEH AIDFAGGTES YDVSCLCSHS FCWNCTEEAH
301: RPVDCDTVGK WILKNSAESE NMNWILANSK PCPKCKRPIE KNHGCMHMTC TPPCKFEFCW LCLNAWTEHG ERTGGFYACN RYEAAKQEGL YDEAERRREM
401: AKNSLERYTH YYERWASNQV SRQKAMGDLQ KMQSEKLGKL SDIQCTPESQ LKFIAEAWLQ IIECRRVLKW TYAYGYYLQD HAKKPFFEYL QGEAESGLER
501: LHKCVEKDIE VFELAEGPSE EFNHFRTKLT GLTSITKTFF ENLVKALENG LADVDSQAAS SKPANSKPSS KTKGGGKGKG SSKNGGSSRN PDGN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.