Factsheet for AT5G08730.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99147	Canola	nucleus	39.4	55.65
Bra018221.1-P	Field mustard	cytosol	48.2	53.67
CDX99146	Canola	nucleus	47.4	53.14
Bra038276.1-P	Field mustard	cytosol	50.0	41.46
AT5G63760.2	Thale cress	nucleus	36.4	40.27
AT5G63730.1	Thale cress	cytosol	38.8	38.34
AT5G63750.1	Thale cress	nucleus	40.6	37.87
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	26.0	25.39
AT1G65430.1	Thale cress	nucleus	27.4	24.16
AT2G31780.1	Thale cress	nucleus	21.4	24.15
AT2G31760.1	Thale cress	nucleus	24.0	23.35
AT1G05880.2	Thale cress	cytosol	22.8	22.98
KRH24184	Soybean	nucleus	23.8	22.8
AT2G31770.1	Thale cress	nucleus	24.6	22.65
AT2G31510.1	Thale cress	nucleus	25.4	22.6
AT1G05890.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	24.2	20.37
AT3G27710.1	Thale cress	nucleus	19.2	17.88
AT3G27720.1	Thale cress	nucleus	15.8	16.02
AT4G34370.1	Thale cress	nucleus	19.0	15.91
AT2G16090.1	Thale cress	nucleus	18.6	15.68

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:830774	UniProt:A0A178UEY0	ProteinID:AED91342.1
ArrayExpress:AT5G08730	EnsemblPlantsGene:AT5G08730	RefSeq:AT5G08730	TAIR:AT5G08730	RefSeq:AT5G08730-TAIR-G	EnsemblPlants:AT5G08730.1
TAIR:AT5G08730.1	Symbol:ATARI16	Unigene:At.54780	ProteinID:CAC35878.1	ProteinID:CAD52898.1	InterPro:E3_UB_ligase_RBR
GO:GO:0000151	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0031624	GO:GO:0032436	GO:GO:0042787	GO:GO:0046872	GO:GO:0061630
InterPro:IBR_dom	InterPro:IPR001876	InterPro:IPR013083	RefSeq:NP_680158.1	ProteinID:OAO91662.1	PFAM:PF01485
ScanProsite:PS01358	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	UniProt:Q9C5A4	SMART:SM00647	SUPFAM:SSF57850
UniParc:UPI000005E836	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg	:	:

Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]

Coordinates

chr5:-:2845694..2847415

Molecular Weight (calculated)

56634.4 Da

IEP (calculated)

5.771

GRAVY (calculated)

-0.379

Length

500 amino acids

Sequence
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.