Factsheet for Bra018221.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99146	Canola	nucleus	93.32	93.95
Bra038276.1-P	Field mustard	cytosol	98.22	73.13
AT5G08730.1	Thale cress	cytosol	53.67	48.2
Bra028646.1-P	Field mustard	nucleus	44.77	42.32
Bra038658.1-P	Field mustard	nucleus	35.86	37.27
Bra038659.1-P	Field mustard	nucleus	38.08	34.13
Bra009365.1-P	Field mustard	cytosol	49.0	32.88
Bra029204.1-P	Field mustard	nucleus	30.29	30.56
Bra021742.1-P	Field mustard	nucleus	29.18	26.31
Bra021726.1-P	Field mustard	nucleus	29.4	26.29
Bra005642.1-P	Field mustard	nucleus	29.84	26.27
Bra006112.1-P	Field mustard	nucleus	30.29	25.47
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.95	25.39
Bra022865.1-P	Field mustard	nucleus	28.29	24.38
Bra015463.1-P	Field mustard	nucleus	29.84	24.01
Bra022845.1-P	Field mustard	nucleus	29.4	23.87
Bra022479.1-P	Field mustard	nucleus	29.62	23.58
KRH24184	Soybean	nucleus	26.95	23.18
Bra023338.1-P	Field mustard	nucleus	27.84	22.64
Bra015460.1-P	Field mustard	nucleus	25.84	22.31
Bra038660.1-P	Field mustard	cytosol	9.13	22.16
Bra039068.1-P	Field mustard	nucleus	21.6	18.51
Bra033024.1-P	Field mustard	nucleus	19.15	16.35
Bra001960.1-P	Field mustard	nucleus	20.94	16.15
Bra011524.1-P	Field mustard	nucleus	19.6	14.89

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra018221	EnsemblPlants:Bra018221.1	EnsemblPlants:Bra018221.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR013083	UniProt:M4DNY3	PFAM:PF01485	PANTHER:PTHR11685
PANTHER:PTHR11685:SF213	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000253F55A	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT5G08730 (E=3e-127) | IBR domain-containing protein

Coordinates

chrA06:+:11212411..11213848

Molecular Weight (calculated)

51254.5 Da

IEP (calculated)

4.516

GRAVY (calculated)

-0.308

Length

449 amino acids

Sequence
(BLAST)

001: METDGQSLYA VLTTNEVGEK MTREINQISE VFLLSKSDAT LILISLRWNS FKASDRLGDD KEKLLSDLGL VKVFSSCQEN DSVSSFAGQE NLVSTPFCSH
101: KFSETCWRSH LSNLLTEEEE RVVLCPNPDC VAPVGPDTIE KLTEPAVKMM YDRYILGSFV EANKESIKWC PAPGCEYAIE LHEDLLEDDD LDFGVVCLCG
201: HTFCWSCTLE SHRPVTCNDA SVWFSSTLDT LKSNAWLLEN TKRCPNCNCH VQRTDDPVLR MITCICSCSF CWRCLLSEEE HNGNWNCVEL LFQLSMRQVD
301: DSSYLRLWET CLEEYENSKS DLKAIEENGV PRLTDNSSFN EQDVDAVKEA TLLMVQCRLV LKWSCAYEYF IAMYQSPKTQ YVKHLRGEAR KTLLRHKATQ
401: EELMNKALTS GYFSSFKVEL SYSSTITGNY FHEYVKTLES GFPEIQVDT

Best Arabidopsis Sequence Match ( AT5G08730.1 )
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Arabidopsis Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.