Factsheet for Bra015460.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47702	Canola	cytosol	98.27	98.08
AT1G05880.2	Thale cress	cytosol	45.77	47.98
Bra021726.1-P	Field mustard	nucleus	39.23	40.64
Bra021742.1-P	Field mustard	nucleus	35.58	37.15
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	36.35	36.91
Bra005642.1-P	Field mustard	nucleus	36.15	36.86
Bra015463.1-P	Field mustard	nucleus	39.42	36.74
Bra022845.1-P	Field mustard	nucleus	38.85	36.53
Bra022865.1-P	Field mustard	nucleus	35.58	35.51
Bra006112.1-P	Field mustard	nucleus	35.58	34.64
Bra022479.1-P	Field mustard	nucleus	37.5	34.57
Bra023338.1-P	Field mustard	nucleus	35.38	33.33
KRH24184	Soybean	nucleus	30.77	30.65
Bra018221.1-P	Field mustard	cytosol	22.31	25.84
Bra038659.1-P	Field mustard	nucleus	22.12	22.95
Bra038658.1-P	Field mustard	nucleus	18.85	22.69
Bra028646.1-P	Field mustard	nucleus	19.23	21.05
Bra038660.1-P	Field mustard	cytosol	7.12	20.0
Bra033024.1-P	Field mustard	nucleus	19.62	19.39
Bra038276.1-P	Field mustard	cytosol	22.31	19.24
Bra029204.1-P	Field mustard	nucleus	16.35	19.1
Bra039068.1-P	Field mustard	nucleus	19.23	19.08
Bra001960.1-P	Field mustard	nucleus	21.15	18.9
Bra011524.1-P	Field mustard	nucleus	20.96	18.44
Bra009365.1-P	Field mustard	cytosol	21.73	16.89

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra015460	EnsemblPlants:Bra015460.1	EnsemblPlants:Bra015460.1-P
InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	GO:GO:0071456	InterPro:IBR_dom
InterPro:IPR001841	InterPro:IPR013083	UniProt:M4DG37	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685
PANTHER:PTHR11685:SF211	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000254531C	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD

Description

AT1G05880 (E=3e-118) | nucleic acid binding / protein binding / structural molecule/ zinc ion binding

Coordinates

chrA10:-:1630614..1633277

Molecular Weight (calculated)

60295.6 Da

IEP (calculated)

5.088

GRAVY (calculated)

-0.657

Length

520 amino acids

Sequence
(BLAST)

001: MDDSDIKRLG EILITAEEEE WLNTPDEHDQ TETSTHQSYV TILKEGDIRS RMKEEIQRVS NTYSISEDDA TLLLAHFRWD DIELHKKWSD NAKSVRESVG
101: IFELERPLDL PSDDKNFCCG ICFKLLSLER SASVSCGHRV CKFCWRSHIN KSINKIADVD WYGTLKCPYD ICRASVGGDM IEKFACEEDK TKYYRYLFRS
201: YVEGSKVIKC CPAKGRSCDV HLTPGSGNFD VLCLCLLSFC WNCSKDVHSP MDCESAAKWL RMNSSDYQDP NWVRQNTVPC PRCNLRIREN QDCSLKMRCF
301: PPCNYDFCWR CRGQWTEHGL DLYTCTHDEV SYEETVFGNM AEYAAGRYKD CHEKWMSNES LMQKAKAKLQ QLHTDVIPDL SNKQLATVHQ LEFVAEAWSQ
401: IMECRRVLKW TYAYEYYLGE DQVEKQDFLK LKQDNAEIPL EKLHYHAENQ LNMLLDSDGP SENFNKFRSD LTDSTRITRN HYELLLRDLE DGLSNVVGAS
501: TSQRAHNEDD ASGSSSIHDD

Best Arabidopsis Sequence Match ( AT1G05880.2 )
(BLAST)

001: MDNNSVIGSE VDAEADESYV NAALEDGQTG KKSVQRNYAT VLTEEDIRAL MEIDVQSVSD FTSLSKAEAT LLLSHLRWNV DCICKQWSAG AQSVRDSVGL
101: LELDPPSDDN EYFCGACGES HPHKNLASVS CGHRICTRCW TSHINKIISE KPAAEWNLWL KCPVRVGLHA SCPASVGLDT IERFASKREK FNYNQYLLRS
201: YVDNRETMKW HPIQGSRCAI DLSPGSGNAS VSCHRLVRFC WNCREDAHSP VDCKTAAKWL LENAVPCPKC KLRIPRNQDN SLKMKCLPCN YVFCWFCHVD
301: WIEDMEGTGG DLHFCTFDAV LSDQRGKMSE SDSNRYEDCY ENWDSNELLM QKEQANLPKL DTIIQELSNT QLENVSQLKF ILEAGLQIIE CRRVLEWTYV
401: YGYYLREDEV GKQNLLKDTQ ERLKKFVENL KHCLETNLQP FRYEEEPSKD FNAFRIKLTE LTSLTRNHYE NVVKDVENGL ASVVSEGEAS GSGRNQ

Arabidopsis Description

ARI12Probable E3 ubiquitin-protein ligase ARI12 [Source:UniProtKB/Swiss-Prot;Acc:Q84RQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.