Factsheet for VIT_05s0102g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0207g00090.t01	Wine grape	nucleus	84.5	84.5
KRH10154	Soybean	nucleus	79.73	79.46
KRH23186	Soybean	nucleus	79.73	79.46
KRH29654	Soybean	nucleus	78.53	78.67
Os04t0492100-01	Rice	nucleus	63.03	78.39
KRH24651	Soybean	nucleus	77.51	77.65
Bra021726.1-P	Field mustard	nucleus	66.27	77.49
GSMUA_Achr8P28870_001	Banana	nucleus	76.66	76.66
GSMUA_Achr6P28580_001	Banana	nucleus	72.23	75.71
EES11042	Sorghum	nucleus	75.64	75.38
PGSC0003DMT400069483	Potato	nucleus	71.21	75.32
Solyc06g073340.2.1	Tomato	nucleus	70.53	75.27
Zm00001d025750_P011	Maize	extracellular	75.47	75.21
Zm00001d003207_P001	Maize	nucleus	75.47	75.21
TraesCS2A01G349600.1	Wheat	nucleus	75.3	75.04
TraesCS2D01G348000.2	Wheat	nucleus	75.3	75.04
TraesCS2B01G368000.2	Wheat	nucleus	75.13	74.87
GSMUA_Achr9P07970_001	Banana	nucleus	70.36	74.82
CDX84781	Canola	nucleus	70.53	74.73
CDY15392	Canola	nucleus	70.87	74.69
Bra022845.1-P	Field mustard	nucleus	70.36	74.68
CDY19083	Canola	nucleus	70.53	74.59
TraesCS6B01G245900.2	Wheat	nucleus	74.45	74.45
GSMUA_Achr3P16920_001	Banana	nucleus	74.28	74.28
HORVU6Hr1G055260.4	Barley	nucleus	74.28	74.02
TraesCS6A01G216900.1	Wheat	nucleus	73.94	73.68
AT2G31510.1	Thale cress	nucleus	70.53	73.67
CDY23938	Canola	nucleus	69.85	73.61
TraesCS6D01G198600.5	Wheat	nucleus	73.76	73.51
CDY10162	Canola	nucleus	67.12	70.99
CDY47704	Canola	nucleus	67.29	70.79
Bra015463.1-P	Field mustard	nucleus	66.95	70.43
CDX86547	Canola	nucleus	66.44	70.4
CDY63791	Canola	nucleus	66.1	70.16
AT1G05890.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	65.42	64.65
CDY34490	Canola	cytosol	13.12	62.6
CDX79440	Canola	cytosol	17.89	61.4
HORVU2Hr1G085060.3	Barley	cytosol	69.85	61.29
CDX70415	Canola	nucleus	54.51	60.95
Bra006112.1-P	Field mustard	nucleus	54.86	60.3
CDX78438	Canola	nucleus	50.43	59.8
CDY68344	Canola	nucleus	50.6	59.64
Bra021742.1-P	Field mustard	nucleus	50.26	59.24
CDY68345	Canola	cytosol	43.95	58.77
CDX91196	Canola	nucleus	50.77	58.55
Bra023338.1-P	Field mustard	nucleus	54.86	58.33
CDY61443	Canola	nucleus	53.15	57.78
AT2G31780.1	Thale cress	nucleus	42.25	55.98
Bra005642.1-P	Field mustard	nucleus	48.38	55.69
AT2G31760.1	Thale cress	nucleus	48.72	55.64
CDX84759	Canola	nucleus	48.72	54.89
Bra022865.1-P	Field mustard	nucleus	48.72	54.89
Zm00001d046141_P001	Maize	cytosol	26.41	54.58
AT2G31770.1	Thale cress	nucleus	50.43	54.51
CDY42068	Canola	nucleus	42.42	54.49
CDY15373	Canola	nucleus	50.43	54.11
CDX79439	Canola	nucleus	28.96	51.99
CDY15374	Canola	nucleus	50.6	51.83
CDY34512	Canola	cytosol, nucleus, plastid	24.53	48.98
VIT_03s0063g02000.t01	Wine grape	nucleus	27.09	26.99
VIT_18s0001g11740.t01	Wine grape	cytosol	25.38	26.85

Protein Annotations

Gene3D:1.20.120.1750	EntrezGene:100262873	wikigene:100262873	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	UniProt:A5C6J4
EMBL:AM484034	ProteinID:CAN64272	ProteinID:CAN64272.1	ProteinID:CCB59822	ProteinID:CCB59822.1	InterPro:E3_UB_ligase_RBR
EMBL:FN596500	GO:GO:0000151	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436	GO:GO:0042787	GO:GO:0046872
GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR001876	InterPro:IPR013083	EntrezGene:LOC100262873
wikigene:LOC100262873	PFAM:PF01485	ScanProsite:PS01358	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF177
SMART:SM00647	SUPFAM:SSF57850	TIGR:TC54040	UniParc:UPI0001522A02	ArrayExpress:VIT_05s0102g00160	EnsemblPlantsGene:VIT_05s0102g00160
EnsemblPlants:VIT_05s0102g00160.t01	unigene:Vvi.24835	unigene:Vvi.4642	RefSeq:XP_003632072	RefSeq:XP_003632072.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg	:	:	:

Description

RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A5C6J4]

Coordinates

chr5:+:22025284..22037728

Molecular Weight (calculated)

66754.2 Da

IEP (calculated)

4.904

GRAVY (calculated)

-0.716

Length

587 amino acids

Sequence
(BLAST)

001: MDSEDDMHDA NDVDSLEDFY SGDTAADSDD DNDADYDFDN DSDDDADAIM LHRHQPNYTI LKEEDIHQHQ EDDIARVAAV LSIASVSASI LLRHYHWSVS
101: KVNDEWFADE SRVRKAVGLL EEPLVRYPNA KELTCGICFE TYPRDMIQSA ACGHPFCSTC WEGYISTSIN DGPGCLMLRC PDPSCRAAVG QDMINLLASD
201: EDNEKYSRYL LRSYIEDNRK TKWCPAPGCE YAVEFVAGSG SYDVACQCSY GFCWNCTEEA HRPVDCSTVA KWILKNSAES ENMNWILANS KPCPKCKRPI
301: EKNQGCMHIT CTPPCKFEFC WLCLGAWSDH GERTGGFYAC NRYEAAKQEG VYDETERRRE MAKNSLERYT HYYERWATNQ SSRQKALADL HQMQNVNIEK
401: LSDKQCQPES QLKFITEAWL QIVECRRVLK WTYAYGYYLP EHELPRRQFF EYLQGEAESG LERLHQCAEK ELQTYLNVDG PSADFNDFRT KLAGLTSVTR
501: NYFENLVRAL ENGLSDVDSY GACSRTTSSK SMGGTSKARG GRGKGTTSRS SSSNKTPDDS SRWYCEHCAT ANAKSAYTCQ MCHQRRA

Best Arabidopsis Sequence Match ( AT2G31510.1 )
(BLAST)

001: MDSEEDMLDA HDMESGEDDF YSGGTDDCND SDDGEPDYGF VEEDADDSAM IASHRSQKNF CVLREEDIRR HQMDNIERVS VVLSITEVEA SILLRHFHWS
101: VGRVHDEWFA DEERVRKTVG ILESHVVPPS DDSELTCGIC FDSYPPEKIA SVSCGHPFCT TCWTGYISTT INDGPGCLML RCPDPSCLAA VGHDMVDKLA
201: SEDEKEKYNR YFLRSYIEDN RKMKWCPAPG CDFAIDFVAG SGNYDVSCLC SFSFCWNCTE EAHRPVDCST VSKWILKNSA ESENMNWILA NSKPCPRCKR
301: PIEKNQGCMH MTCTPPCKYE FCWLCLGAWM DHGERTGGFY ACNRYEVAKQ EGQYDETERR REMAKNSLER YTHYYERWAS NQTSRQKAMA DLQQAQMQNL
401: EKLSDKQCTP ESQLKFILEA WLQIIECRRV LKWTYAYGYY LPEHEHAKRQ FFEYLQGEAE SGLERLHQCV EKDLVQFLIA EGPSKDFNDF RTKLAGLTSV
501: TKNYFENLVK ALENGLADVD SHAACSSKST SSKSTGCSSK TRGKGKGSSR TGGSSRNPDD NL

Arabidopsis Description

ARI7Probable E3 ubiquitin-protein ligase ARI7 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.