Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G055260.4 | Barley | nucleus | 98.98 | 98.64 |
| TraesCS6A01G216900.1 | Wheat | nucleus | 98.98 | 98.64 |
| TraesCS6D01G198600.5 | Wheat | nucleus | 98.64 | 98.3 |
| EES11042 | Sorghum | nucleus | 86.88 | 86.59 |
| Os04t0492100-01 | Rice | nucleus | 69.17 | 86.02 |
| TraesCS2B01G368000.2 | Wheat | nucleus | 86.03 | 85.74 |
| Zm00001d003207_P001 | Maize | nucleus | 85.86 | 85.57 |
| Zm00001d025750_P011 | Maize | extracellular | 85.18 | 84.89 |
| GSMUA_Achr8P28870_001 | Banana | nucleus | 78.02 | 78.02 |
| GSMUA_Achr6P28580_001 | Banana | nucleus | 73.08 | 76.61 |
| GSMUA_Achr9P07970_001 | Banana | nucleus | 71.72 | 76.27 |
| GSMUA_Achr3P16920_001 | Banana | nucleus | 75.47 | 75.47 |
| VIT_05s0102g00160.t01 | Wine grape | nucleus | 74.45 | 74.45 |
| Bra021726.1-P | Field mustard | nucleus | 63.03 | 73.71 |
| KRH23186 | Soybean | nucleus | 72.06 | 71.82 |
| KRH10154 | Soybean | nucleus | 71.89 | 71.65 |
| KRH29654 | Soybean | nucleus | 71.38 | 71.5 |
| Solyc06g073340.2.1 | Tomato | nucleus | 66.95 | 71.45 |
| Bra022845.1-P | Field mustard | nucleus | 67.12 | 71.25 |
| CDY19083 | Canola | nucleus | 67.29 | 71.17 |
| CDX84781 | Canola | nucleus | 67.12 | 71.12 |
| KRH24651 | Soybean | nucleus | 70.87 | 70.99 |
| PGSC0003DMT400069483 | Potato | nucleus | 66.95 | 70.81 |
| CDY15392 | Canola | nucleus | 66.95 | 70.56 |
| CDY23938 | Canola | nucleus | 66.27 | 69.84 |
| AT2G31510.1 | Thale cress | nucleus | 66.78 | 69.75 |
| Bra015463.1-P | Field mustard | nucleus | 64.91 | 68.28 |
| CDY47704 | Canola | nucleus | 64.74 | 68.1 |
| CDY10162 | Canola | nucleus | 64.22 | 67.93 |
| CDX86547 | Canola | nucleus | 63.2 | 66.97 |
| CDY63791 | Canola | nucleus | 62.86 | 66.73 |
| AT1G05890.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 62.35 | 61.62 |
| CDY34490 | Canola | cytosol | 12.44 | 59.35 |
| CDX79440 | Canola | cytosol | 17.21 | 59.06 |
| CDX70415 | Canola | nucleus | 52.47 | 58.67 |
| CDY68344 | Canola | nucleus | 49.06 | 57.83 |
| Bra006112.1-P | Field mustard | nucleus | 52.47 | 57.68 |
| TraesCS5B01G297300.1 | Wheat | nucleus | 55.03 | 57.47 |
| Bra021742.1-P | Field mustard | nucleus | 48.72 | 57.43 |
| TraesCS7B01G165100.2 | Wheat | nucleus | 58.6 | 56.95 |
| CDX78438 | Canola | nucleus | 47.87 | 56.77 |
| CDY68345 | Canola | cytosol | 42.42 | 56.72 |
| CDX91196 | Canola | nucleus | 48.55 | 55.99 |
| Bra023338.1-P | Field mustard | nucleus | 52.3 | 55.62 |
| AT2G31780.1 | Thale cress | nucleus | 41.74 | 55.3 |
| CDY61443 | Canola | nucleus | 50.6 | 55.0 |
| Zm00001d046141_P001 | Maize | cytosol | 26.41 | 54.58 |
| Bra022865.1-P | Field mustard | nucleus | 47.87 | 53.93 |
| CDX84759 | Canola | nucleus | 47.87 | 53.93 |
| Bra005642.1-P | Field mustard | nucleus | 46.68 | 53.73 |
| AT2G31760.1 | Thale cress | nucleus | 46.34 | 52.92 |
| CDY15373 | Canola | nucleus | 49.23 | 52.83 |
| CDX79439 | Canola | nucleus | 28.96 | 51.99 |
| AT2G31770.1 | Thale cress | nucleus | 48.04 | 51.93 |
| CDY42068 | Canola | nucleus | 40.2 | 51.64 |
| CDY15374 | Canola | nucleus | 49.74 | 50.96 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 23.85 | 47.62 |
| TraesCS5B01G364000.1 | Wheat | nucleus | 38.84 | 38.32 |
| TraesCS6B01G472300.1 | Wheat | nucleus | 36.29 | 37.57 |
| TraesCS4B01G236900.1 | Wheat | nucleus | 26.41 | 25.0 |
| TraesCS4B01G071800.1 | Wheat | nucleus | 22.32 | 23.86 |
| TraesCS4B01G071700.1 | Wheat | nucleus | 21.98 | 23.84 |
| TraesCS4B01G070800.1 | Wheat | nucleus | 21.64 | 23.69 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IBR_dom | InterPro:IPR001841 | InterPro:IPR001876 | InterPro:IPR013083 |
| PFAM:PF01485 | ScanProsite:PS01358 | PFscan:PS50089 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF177 | SMART:SM00547 |
| SMART:SM00647 | SUPFAM:SSF57850 | SUPFAM:SSF90209 | EnsemblPlantsGene:TraesCS6B01G245900 | EnsemblPlants:TraesCS6B01G245900.2 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | TIGR:cd16623 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:+:438616459..438627869
Molecular Weight (calculated)
65964.3 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.708
Length
587 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSEDDTRDS ADEDFYSGGE AGLALSDDGD ADYDFADRDS DDSDDLISHR QQQNYSVLSE TDIKQHQADD MNRVSTVLSI SKSEACALLR SYNWSVSKVH
101: DEWFVDEARV RTAVGLPEKQ NEMPNERELT CGICFESCPR ESMGAASCGH PFCGVCWRGY ISTAINDGPG CLMLRCPDPS CSAAVGQDMV NLFASDEDKG
201: KYERYLCRSY IEDNRKTKWC PAPGCEYAVE FVVGSGSYDV SCGCSYGFCW NCTEEAHRPV DCSTVSKWIL KNSAESENMN WILANSKPCP KCKRPIEKNQ
301: GCMHITCTPP CKFEFCWLCL GPWSDHGERT GGFYACNRYE AARQEGAFDD SERRREMAKN SLERYTHYYE RWAANQSSRQ KALGDLQSLQ NDKLEKLSDI
401: QSQPESQLKF IIEAWLQIVE CRRVLKWTYA YGYYLPDHEH AKRQFFEYVQ GEAESGLERL HQCAEKELQI YLDADCPSKD FNDFRTKLAG LTSVTRNYFE
501: NLVRALESGL NDVGAHSGQG ACSKAVSSKN LGGKSKSGKN KAPVGASKSG SSTRGMDDGN IWACDQCTFA NPRSARSCQV CDHQQHR
101: DEWFVDEARV RTAVGLPEKQ NEMPNERELT CGICFESCPR ESMGAASCGH PFCGVCWRGY ISTAINDGPG CLMLRCPDPS CSAAVGQDMV NLFASDEDKG
201: KYERYLCRSY IEDNRKTKWC PAPGCEYAVE FVVGSGSYDV SCGCSYGFCW NCTEEAHRPV DCSTVSKWIL KNSAESENMN WILANSKPCP KCKRPIEKNQ
301: GCMHITCTPP CKFEFCWLCL GPWSDHGERT GGFYACNRYE AARQEGAFDD SERRREMAKN SLERYTHYYE RWAANQSSRQ KALGDLQSLQ NDKLEKLSDI
401: QSQPESQLKF IIEAWLQIVE CRRVLKWTYA YGYYLPDHEH AKRQFFEYVQ GEAESGLERL HQCAEKELQI YLDADCPSKD FNDFRTKLAG LTSVTRNYFE
501: NLVRALESGL NDVGAHSGQG ACSKAVSSKN LGGKSKSGKN KAPVGASKSG SSTRGMDDGN IWACDQCTFA NPRSARSCQV CDHQQHR
001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
Arabidopsis Description
ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.