Factsheet for TraesCS4B01G071800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G243200.1	Wheat	nucleus	98.18	98.36
TraesCS4D01G070600.1	Wheat	nucleus	95.99	97.96
HORVU4Hr1G011910.1	Barley	cytosol, plastid	93.08	83.5
Os03t0625800-01	Rice	cytosol	65.76	66.85
Zm00001d013716_P002	Maize	nucleus	63.39	65.17
EER93790	Sorghum	nucleus	63.39	64.21
TraesCS4B01G071700.1	Wheat	nucleus	59.2	60.07
TraesCS4B01G070800.1	Wheat	nucleus	53.01	54.29
CDX71262	Canola	nucleus	44.26	41.82
CDY49559	Canola	nucleus	44.08	41.58
Bra001960.1-P	Field mustard	nucleus	44.08	41.58
AT3G27710.1	Thale cress	nucleus	40.26	41.15
Solyc04g079780.2.1	Tomato	cytosol	38.98	41.0
PGSC0003DMT400043486	Potato	cytosol	38.8	40.88
Bra011524.1-P	Field mustard	nucleus	43.9	40.78
CDX75425	Canola	nucleus	43.9	40.78
VIT_18s0001g11740.t01	Wine grape	cytosol	40.98	40.54
PGSC0003DMT400064832	Potato	nucleus	43.53	40.51
Solyc01g109280.2.1	Tomato	nucleus	43.53	40.51
CDX69049	Canola	nucleus	43.9	40.37
GSMUA_Achr5P01850_001	Banana	nucleus	39.53	40.26
CDY49768	Canola	nucleus	34.97	40.0
TraesCS4B01G236900.1	Wheat	nucleus	44.99	39.84
Solyc12g089000.1.1	Tomato	nucleus	38.8	39.66
AT2G16090.1	Thale cress	nucleus	42.81	39.63
VIT_03s0063g02000.t01	Wine grape	nucleus	42.44	39.56
Bra039068.1-P	Field mustard	nucleus	37.7	39.5
CDY03991	Canola	nucleus	34.79	39.46
PGSC0003DMT400039948	Potato	nucleus	38.98	39.41
AT4G34370.1	Thale cress	nucleus	42.81	39.36
CDY00148	Canola	nucleus	34.61	39.26
CDY20037	Canola	nucleus	37.34	39.12
Bra033024.1-P	Field mustard	nucleus	37.34	38.97
KRH24517	Soybean	nucleus	41.17	38.97
KRH29521	Soybean	nucleus	40.98	38.79
AT3G27720.1	Thale cress	nucleus	32.06	35.7
TraesCS5B01G297300.1	Wheat	nucleus	24.59	24.02
TraesCS7B01G165100.2	Wheat	nucleus	24.77	22.52
TraesCS6B01G245900.2	Wheat	nucleus	23.86	22.32
TraesCS2B01G368000.2	Wheat	nucleus	22.95	21.39
TraesCS6B01G472300.1	Wheat	nucleus	21.86	21.16
TraesCS5B01G364000.1	Wheat	nucleus	22.22	20.5

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF01485
PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4B01G071800
EnsemblPlants:TraesCS4B01G071800.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:66465097..66468506

Molecular Weight (calculated)

63076.6 Da

IEP (calculated)

5.250

GRAVY (calculated)

-0.587

Length

549 amino acids

Sequence
(BLAST)

001: MASDDDCYYY YEDDGDGEED EEEEGEEAAD WDGLAVGADE DDLGLLEDDP PHSERRVDCW AITEDTLSAA QQEDLSIMMN LLNIKQHQAR SLFIHHRWKI
101: DCIYDCLDRK GRDRMLREAG IVLQEKSSML IGASRTPSTS VQCNVCFDDD LSPAAVSTMD CGHCFCNDCW TEHFNAAIDS GKKQIRCMEV KCLAICDEGI
201: VQRLLGQKYP DAAKRFDRFL LESYLEDNDF VKWCPSIPHC GRAIRVGTGD RYCEVKCLCG VSFCFNCMEQ THSPCPCNIW RQWNTRIHGE SENIKWIVKN
301: TKSCPKCFKP IEKRDGCNLV KCKCGQYMCW LCGGPTGSAH TWTNIEGHSC NRYKESKDKV DTGRRQLERY AHYCNRFKIH EDSYKEQHEK LGPAIKEKVK
401: QLESNHLRPR LIRDGDWLTD AHQRLLWSRQ VVSRSYAFAY HMFGGELQAH RSERGSLAPA QNLFESQQEQ LERHVEQLSK VLVTDILALP DQEIVKVKQE
501: VVNLDKILER LCGEMYTCIQ DELLPLLTEP MDIAAYTPDG PVRAKVFRA

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.