CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29521	Soybean	nucleus	97.41	97.41
VIT_03s0063g02000.t01	Wine grape	nucleus	75.34	74.19
Solyc01g109280.2.1	Tomato	nucleus	72.59	71.36
PGSC0003DMT400064832	Potato	nucleus	72.24	71.02
Bra001960.1-P	Field mustard	nucleus	67.24	67.01
CDY49559	Canola	nucleus	67.24	67.01
CDX71262	Canola	nucleus	67.07	66.95
AT2G16090.1	Thale cress	nucleus	67.93	66.44
AT4G34370.1	Thale cress	nucleus	67.24	65.33
Bra011524.1-P	Field mustard	nucleus	66.21	64.97
CDX75425	Canola	nucleus	66.21	64.97
CDX69049	Canola	nucleus	66.03	64.15
EER92613	Sorghum	nucleus	62.93	60.43
Os03t0233500-01	Rice	nucleus	63.45	60.13
GSMUA_Achr6P23120_001	Banana	nucleus	65.86	59.41
HORVU4Hr1G066180.1	Barley	nucleus	63.45	59.35
TraesCS4A01G061500.1	Wheat	nucleus	63.28	59.19
TraesCS4B01G236900.1	Wheat	nucleus	63.1	59.03
TraesCS4D01G238400.2	Wheat	nucleus	63.1	59.03
CDY49768	Canola	nucleus	48.1	58.12
AT3G27710.1	Thale cress	nucleus	53.79	58.1
Zm00001d028285_P003	Maize	nucleus	61.9	57.9
HORVU1Hr1G018020.1	Barley	cytosol	18.1	57.07
CDY03991	Canola	nucleus	47.59	57.02
Bra033024.1-P	Field mustard	nucleus	51.55	56.84
Bra039068.1-P	Field mustard	nucleus	50.34	55.73
HORVU7Hr1G068450.2	Barley	nucleus	24.48	55.47
CDY20037	Canola	nucleus	50.0	55.34
CDY00148	Canola	nucleus	45.52	54.55
AT3G27720.1	Thale cress	nucleus	45.69	53.75
GSMUA_Achr5P01850_001	Banana	nucleus	48.45	52.13
Zm00001d048017_P003	Maize	nucleus	60.52	45.88
EER93790	Sorghum	nucleus	39.31	42.07
TraesCS4A01G243200.1	Wheat	nucleus	39.14	41.42
TraesCS4D01G070400.1	Wheat	nucleus	38.1	41.39
TraesCS4B01G071800.1	Wheat	nucleus	38.97	41.17
TraesCS4D01G070600.1	Wheat	nucleus	38.1	41.08
TraesCS4B01G071700.1	Wheat	nucleus	38.28	41.04
Zm00001d013716_P002	Maize	nucleus	37.76	41.01
Os03t0625800-01	Rice	cytosol	38.1	40.93
Os03t0625933-00	Rice	nucleus	22.76	40.12
TraesCS4D01G069600.1	Wheat	nucleus	36.55	39.7
EER93787	Sorghum	nucleus	36.55	39.63
TraesCS4A01G244200.1	Wheat	nucleus	36.21	39.18
TraesCS4B01G070800.1	Wheat	nucleus	36.03	38.99
HORVU4Hr1G011770.1	Barley	nucleus	35.52	38.36
HORVU4Hr1G011910.1	Barley	cytosol, plastid	39.14	37.09
Os03t0626100-01	Rice	nucleus	36.03	36.67
KRH29654	Soybean	nucleus	26.55	26.28
KRH24651	Soybean	nucleus	26.38	26.11
KRH23186	Soybean	nucleus	25.86	25.47
KRH10154	Soybean	nucleus	25.86	25.47
KRH24184	Soybean	nucleus	22.24	24.71

Protein Annotations

Gene3D:1.20.120.1750	EntrezGene:100783343	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EMBL:ACUP02007178	InterPro:E3_UB_ligase_RBR
EnsemblPlantsGene:GLYMA_12G046400	GO:GO:0000151	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436	GO:GO:0042787	GO:GO:0046872
GO:GO:0061630	UniProt:I1LQ69	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH24517
ProteinID:KRH24517	ProteinID:KRH24517.1	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150
SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI000233D4A1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:3365588..3369352

Molecular Weight (calculated)

66618.3 Da

IEP (calculated)

5.286

GRAVY (calculated)

-0.616

Length

580 amino acids

Sequence
(BLAST)

001: MDDYASSDED YHYDSDQEDS VEAYENDENY ALLSSKGPTT KVITKESLLA AQKEDLRRVM DMLSVREQHA RTLLIFHRWD VENLFEVYVD KGKSFLFAEA
101: GVSVDEHRDS DSPVPPDFMC NICMDEVPSS KTTRMDCGHC FCNGCWIEHF IVKINEGQSK RIRCMEHKCN SICDEAVVRT LLSREHSHMA EKYERFLLES
201: YIEDNKRVKW CPSTPHCGNA IRVEDDELCE VECSCGVQFC FSCLSEAHSP CSCLMWELWA KKCRDESETV NWITVHTKPC PKCHKPVEKN GGCNLVSCIC
301: GQAFCWLCGG ATGREHTWSS IAGHSCGRYK EQEKTAERAK RDLYRYMHYH NRYKAHTDSF KIESKLKETI QGKISISEEK DSTLRDYSWV NNGLSRLFRS
401: RRVLSYSYAF AFYMFGDELF KDEMTDAQRE IKQNLFEDQQ QQLEANVEKL SKILEEPFET FSDDKVVEIR MQILNLSTII DKLCQKMYEC IENDLLGSLN
501: LGIHSIAPYK SKGIERASEL SVCWNNKVNN TGVTEELDRP SGSGSSEDSG CSSRKRPRKE GLGGGGFFDL NLPAEFVDRN

Best Arabidopsis Sequence Match ( AT4G34370.1 )
(BLAST)

001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN

Arabidopsis Description

ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.