CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G070400.1	Wheat	nucleus	55.14	55.24
Os03t0625933-00	Rice	nucleus	33.46	54.41
TraesCS4B01G071700.1	Wheat	nucleus	54.77	54.16
EER93790	Sorghum	nucleus	50.47	49.82
GSMUA_Achr5P01850_001	Banana	nucleus	39.63	39.33
Solyc04g079780.2.1	Tomato	cytosol	38.13	39.08
PGSC0003DMT400043486	Potato	cytosol	37.76	38.77
VIT_18s0001g11740.t01	Wine grape	cytosol	40.19	38.74
AT3G27710.1	Thale cress	nucleus	38.5	38.36
CDY00148	Canola	nucleus	34.58	38.22
Solyc12g089000.1.1	Tomato	nucleus	38.32	38.17
PGSC0003DMT400064832	Potato	nucleus	41.68	37.8
Solyc01g109280.2.1	Tomato	nucleus	41.68	37.8
Bra039068.1-P	Field mustard	nucleus	36.64	37.4
PGSC0003DMT400039948	Potato	nucleus	37.94	37.38
VIT_03s0063g02000.t01	Wine grape	nucleus	40.93	37.18
CDY20037	Canola	nucleus	36.26	37.02
KRH29521	Soybean	nucleus	40.0	36.9
Bra011524.1-P	Field mustard	nucleus	40.75	36.89
CDX75425	Canola	nucleus	40.75	36.89
CDY49768	Canola	nucleus	33.08	36.88
CDX71262	Canola	nucleus	40.0	36.83
CDY03991	Canola	nucleus	33.27	36.78
EER92613	Sorghum	nucleus	41.5	36.76
CDY49559	Canola	nucleus	39.81	36.6
Bra001960.1-P	Field mustard	nucleus	39.81	36.6
KRH24517	Soybean	nucleus	39.63	36.55
CDX69049	Canola	nucleus	40.75	36.52
AT2G16090.1	Thale cress	nucleus	40.19	36.26
Bra033024.1-P	Field mustard	nucleus	35.14	35.74
AT4G34370.1	Thale cress	nucleus	39.81	35.68
AT3G27720.1	Thale cress	nucleus	30.28	32.86
KXG36175	Sorghum	nucleus	24.49	23.82
EES15269	Sorghum	nucleus	25.61	22.99
OQU83976	Sorghum	cytosol	22.24	22.33
EES11042	Sorghum	nucleus	24.49	22.24
EES08942	Sorghum	cytosol	22.62	21.84
OQU83975	Sorghum	nucleus	23.36	20.94
EES08939	Sorghum	nucleus	22.8	18.57
EES08947	Sorghum	nucleus	22.8	11.24

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:8062481	UniProt:C5WS67	InterPro:E3_UB_ligase_RBR
EnsemblPlants:EER93787	ProteinID:EER93787	ProteinID:EER93787.1	GO:GO:0000151	GO:GO:0000209	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436
GO:GO:0042787	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF207	SMART:SM00647	EnsemblPlantsGene:SORBI_3001G162900
SUPFAM:SSF57850	UniParc:UPI0001A82BE7	RefSeq:XP_002466789.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:13425556..13430728

Molecular Weight (calculated)

60392.5 Da

IEP (calculated)

6.036

GRAVY (calculated)

-0.486

Length

535 amino acids

Sequence
(BLAST)

001: MPHHPPRMYN TSDFYGSDED EELVTGDDDE DEGWQDQEED DMPPRRSLQI SAIKKDSLSV AQQQDLSMVM GLFNIKQHHA RALLIHCRWN TDCLGDHLER
101: KGQERMLMEA GVVLQQQETS SSSSSSRVLC EVCFEDSSPR HVSTMDCGHS FCNDCWTQHF VAALDLGKKQ IRCMGFRCPA ICDEAVVQRL LGRRDPAAAR
201: RLHDLLLRSY VDDNGAVKWC PSVPHCGRAI RVDAADEAEP LCEVSCPCGV SFCFRCAAAA HSPCPCAMWE RWEAKSQGEA ENVRWLLANT KSCPKCFRPI
301: DKIDGCNLMT CQCGQHFCWL CGGATGFAHT WTRINNHSCN RFEKGEEKRK VDDAKRQVRR YEHYYQRFHA HDFSYRAEHD KLGPAVAGRA LTLERSGGVL
401: TRDAAWLGDA HGSLLRCRQV LARSYAFAYY MFDAEATATL SMAKKQALFE DYQEQVEGNV ERLSKLLETT DVPELPEPEI LQAKQDVTNL VRVVEAHCGK
501: MYGCIQDELL PMLVEPMSIV AYQQGGPSKA HELPA

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.