CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031694_P003	Maize	nucleus	94.3	85.93
Os08t0540300-01	Rice	nucleus	83.89	82.37
TraesCS7B01G165100.2	Wheat	nucleus	80.2	79.14
TraesCS7A01G267200.4	Wheat	nucleus	80.03	79.1
TraesCS7D01G267600.2	Wheat	nucleus	79.53	78.48
HORVU7Hr1G056020.3	Barley	cytosol	34.4	72.69
HORVU7Hr1G056040.5	Barley	nucleus, plastid	78.86	70.78
EES11042	Sorghum	nucleus	60.23	60.95
KXG36175	Sorghum	nucleus	35.74	38.73
EES08942	Sorghum	cytosol	35.4	38.09
OQU83976	Sorghum	cytosol	33.22	37.15
OQU83975	Sorghum	nucleus	35.57	35.51
EES08939	Sorghum	nucleus	37.08	33.64
EER92613	Sorghum	nucleus	26.17	25.83
EER93787	Sorghum	nucleus	22.99	25.61
EER93790	Sorghum	nucleus	22.99	25.28
EES08947	Sorghum	nucleus	38.59	21.2

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:2.20.28.140	Gene3D:3.30.40.10	EntrezGene:8060910	UniProt:C5YHJ7
InterPro:E3_UB_ligase_RBR	EnsemblPlants:EES15269	ProteinID:EES15269	ProteinID:EES15269.1	GO:GO:0000151	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624
GO:GO:0032436	GO:GO:0042787	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR001876	InterPro:IPR013083	PFAM:PF01485	ScanProsite:PS01358	PFscan:PS50089	PFscan:PS50199
PANTHER:PTHR11685	PANTHER:PTHR11685:SF154	SMART:SM00547	SMART:SM00647	EnsemblPlantsGene:SORBI_3007G185900	SUPFAM:SSF57850
SUPFAM:SSF90209	unigene:Sbi.6907	UniParc:UPI0001A87EF1	RefSeq:XP_002445774.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:61865266..61872224

Molecular Weight (calculated)

67240.2 Da

IEP (calculated)

4.555

GRAVY (calculated)

-0.630

Length

596 amino acids

Sequence
(BLAST)

001: MDSDVEMNAA SDEEVMDDED YYDYCDSDMG DDGDGGSEEE EELVAGDYDE GIEAEGTDEV VSRREQTFVV LNEEVISERQ AEDVSKVSAV LLITREEACA
101: LLHHYKWNIS KLSDEWFADE EKVRHTVGLL LNGNHDPCSR KLTCGICFEG YSSDMMSSAG CAHFYCHECW EGYISAAIGG GPGCLSLRCP DPSCSAMVLQ
201: GMINKLAKDE DKEKYARFLL RAYVEGSKKT KWCPAPDCTC AVEFLGDENY DVSCNCKFSF CWNCTEEAHR PVNCETVSKW ILKNSAESEN MNWILANSKP
301: CPKCKRPIEK NQGCMHMTCT PPCKFEFCWL CLGAWSDHGE RTGGFYACNR YESAKKEGVY DETEARRERA KNSLERYMHY YERWASNQTS RQKAQADLLK
401: AEKDQLANLT DIFGIPETQL KFIIEAWSQI IECRRVLKWT YAYGYYLDDK VKSEFFEYLQ GEAESGLERL HQCAEKDLQK FLPSVKSDST ETTAPTPDEF
501: SEFRVKLAGL TSVTRNYFEN LVQALEAGLE DVRATAQAAG TSSAATSSKK GGTKSKKKQP TKPSSDHTDD GWPCERCTFL NPPSVDACSV CEKSRY

Best Arabidopsis Sequence Match ( AT1G65430.1 )
(BLAST)

001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR

Arabidopsis Description

ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.