CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028285_P003	Maize	nucleus	93.54	91.13
Os03t0233500-01	Rice	nucleus	87.75	86.6
HORVU4Hr1G066180.1	Barley	nucleus	88.08	85.81
TraesCS4A01G061500.1	Wheat	nucleus	87.91	85.65
TraesCS4D01G238400.2	Wheat	nucleus	87.58	85.32
TraesCS4B01G236900.1	Wheat	nucleus	87.58	85.32
HORVU7Hr1G068450.2	Barley	nucleus	33.61	79.3
HORVU1Hr1G018020.1	Barley	cytosol	22.85	75.0
Zm00001d048017_P003	Maize	nucleus	91.56	72.29
GSMUA_Achr6P23120_001	Banana	nucleus	76.82	72.16
VIT_03s0063g02000.t01	Wine grape	nucleus	62.09	63.67
KRH24517	Soybean	nucleus	60.43	62.93
KRH29521	Soybean	nucleus	60.43	62.93
PGSC0003DMT400064832	Potato	nucleus	61.42	62.88
Solyc01g109280.2.1	Tomato	nucleus	60.93	62.37
CDY49559	Canola	nucleus	59.44	61.68
Bra001960.1-P	Field mustard	nucleus	59.27	61.51
AT2G16090.1	Thale cress	nucleus	60.1	61.21
CDX71262	Canola	nucleus	58.11	60.41
VIT_18s0001g11740.t01	Wine grape	cytosol	54.8	59.64
CDX75425	Canola	nucleus	57.78	59.05
Bra011524.1-P	Field mustard	nucleus	57.78	59.05
CDX69049	Canola	nucleus	57.62	58.29
AT4G34370.1	Thale cress	nucleus	57.28	57.96
PGSC0003DMT400043486	Potato	cytosol	49.17	57.01
Solyc04g079780.2.1	Tomato	cytosol	48.84	56.51
AT3G27710.1	Thale cress	nucleus	48.18	54.19
PGSC0003DMT400039948	Potato	nucleus	48.68	54.14
Solyc12g089000.1.1	Tomato	nucleus	47.85	53.82
CDY49768	Canola	nucleus	41.89	52.71
CDY03991	Canola	nucleus	41.56	51.86
Bra039068.1-P	Field mustard	nucleus	44.37	51.15
CDY20037	Canola	nucleus	43.87	50.57
Bra033024.1-P	Field mustard	nucleus	44.04	50.57
AT3G27720.1	Thale cress	nucleus	41.23	50.51
CDY00148	Canola	nucleus	40.07	50.0
EER93790	Sorghum	nucleus	40.07	44.65
EER93787	Sorghum	nucleus	36.76	41.5
EES15269	Sorghum	nucleus	25.83	26.17
EES11042	Sorghum	nucleus	24.83	25.47
KXG36175	Sorghum	nucleus	22.52	24.73
OQU83976	Sorghum	cytosol	20.36	23.08
EES08942	Sorghum	cytosol	20.86	22.74
EES08939	Sorghum	nucleus	22.19	20.4
OQU83975	Sorghum	nucleus	20.03	20.27
EES08947	Sorghum	nucleus	23.01	12.81

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:8085265	UniProt:C5WRT5	InterPro:E3_UB_ligase_RBR
EnsemblPlants:EER92613	ProteinID:EER92613	ProteinID:EER92613.1	GO:GO:0000151	GO:GO:0000209	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436
GO:GO:0042787	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083
PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	EnsemblPlantsGene:SORBI_3001G449400
SUPFAM:SSF57850	unigene:Sbi.9616	UniParc:UPI0001A827A9	RefSeq:XP_002465615.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:72650052..72657209

Molecular Weight (calculated)

69381.3 Da

IEP (calculated)

5.148

GRAVY (calculated)

-0.664

Length

604 amino acids

Sequence
(BLAST)

001: MGRDAEETSP PVSSSELEQE EDDDDCYLSD QEDDALEESV LQVLEDEHHE DCHWSASCVI TKESLLAAQR EDLRKVMELL GLREHHARTL LIHYRWDVER
101: IFELLDQKGR DRLFSEAGIP LQYTNNAGTT SSAEVTCNVC YDDVPPSTAS EMDCGHSYCN DCWTEYFIVK INEGQSRRVR CMAPKCNAIC DEAIIRKLVI
201: ARHPDIAERF ERFLLESYIE DNDTVKWCPS TPHCGNAIRV KGDIYCEVEC TCGCQFCFNC SLQAHSPCSC MMWELWIKKC RDESETVNWI TVNTKPCPKC
301: HKPVEKNGGC NLVACICGQA FCWLCGGATG RDHTWSSISG HSCGRFTDDQ TKKTEQARRD LYRYMHYHNR YKAHTDSLKQ EAKLKNEIQG KISISENKES
401: KIKDYSWVMN GLNRLFRSRR VLSYSYPFAF YMFGDEIFKD EMTPHEREVK QNLFEDQQQQ LEFNVERLSG FLEKDFQLFT DDEVMDTMKH VINLSNVVDK
501: LCKQMYQCIE NDLLYPLRTP HNIAPYKSKG LDRASELNIS WDSAEQSSQS TKRSQNEAST VLGKRGSSSD NRGHQSNKRE RVDANGGGSA LFDLNVPAEV
601: VDKI

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.