Factsheet for Solyc01g109280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064832	Potato	nucleus	98.14	98.14
VIT_03s0063g02000.t01	Wine grape	nucleus	76.95	77.08
KRH29521	Soybean	nucleus	71.69	72.93
KRH24517	Soybean	nucleus	71.36	72.59
CDY49559	Canola	nucleus	67.63	68.56
AT2G16090.1	Thale cress	nucleus	68.81	68.47
Bra001960.1-P	Field mustard	nucleus	67.46	68.38
CDX71262	Canola	nucleus	67.29	68.33
AT4G34370.1	Thale cress	nucleus	65.42	64.66
CDX75425	Canola	nucleus	64.24	64.13
Bra011524.1-P	Field mustard	nucleus	64.07	63.96
CDX69049	Canola	nucleus	64.41	63.65
EER92613	Sorghum	nucleus	62.37	60.93
GSMUA_Achr6P23120_001	Banana	nucleus	66.27	60.81
Os03t0233500-01	Rice	nucleus	62.2	59.97
Solyc04g079780.2.1	Tomato	cytosol	53.05	59.96
HORVU4Hr1G066180.1	Barley	nucleus	62.54	59.52
TraesCS4A01G061500.1	Wheat	nucleus	62.2	59.19
TraesCS4B01G236900.1	Wheat	nucleus	62.03	59.03
TraesCS4D01G238400.2	Wheat	nucleus	62.03	59.03
Zm00001d028285_P003	Maize	nucleus	61.53	58.55
AT3G27710.1	Thale cress	nucleus	52.71	57.91
CDY49768	Canola	nucleus	46.95	57.71
Solyc12g089000.1.1	Tomato	nucleus	52.37	57.54
CDY03991	Canola	nucleus	46.1	56.2
Bra033024.1-P	Field mustard	nucleus	50.0	56.08
Bra039068.1-P	Field mustard	nucleus	48.64	54.77
CDY20037	Canola	nucleus	48.47	54.58
CDY00148	Canola	nucleus	44.75	54.55
HORVU1Hr1G018020.1	Barley	cytosol	16.27	52.17
GSMUA_Achr5P01850_001	Banana	nucleus	47.63	52.13
AT3G27720.1	Thale cress	nucleus	43.56	52.13
HORVU7Hr1G068450.2	Barley	nucleus	22.03	50.78
Zm00001d048017_P003	Maize	nucleus	60.0	46.27
EER93790	Sorghum	nucleus	40.51	44.1
TraesCS4D01G070400.1	Wheat	nucleus	39.83	44.01
TraesCS4D01G070600.1	Wheat	nucleus	39.83	43.68
TraesCS4B01G071700.1	Wheat	nucleus	40.0	43.62
TraesCS4A01G243200.1	Wheat	nucleus	40.51	43.61
TraesCS4B01G071800.1	Wheat	nucleus	40.51	43.53
Os03t0625800-01	Rice	cytosol	38.98	42.59
Os03t0625933-00	Rice	nucleus	23.73	42.55
Zm00001d013716_P002	Maize	nucleus	38.14	42.13
EER93787	Sorghum	nucleus	37.8	41.68
TraesCS4D01G069600.1	Wheat	nucleus	37.12	41.01
TraesCS4A01G244200.1	Wheat	nucleus	36.95	40.67
TraesCS4B01G070800.1	Wheat	nucleus	36.61	40.3
HORVU4Hr1G011770.1	Barley	nucleus	35.76	39.29
HORVU4Hr1G011910.1	Barley	cytosol, plastid	40.0	38.56
Os03t0626100-01	Rice	nucleus	35.59	36.84
Solyc06g073340.2.1	Tomato	nucleus	25.93	27.82
Solyc11g008580.1.1	Tomato	nucleus	25.93	25.89
Solyc01g005650.1.1	Tomato	nucleus	22.37	25.29
Solyc01g044340.2.1	Tomato	cytosol	3.39	14.6
Solyc01g044350.2.1	Tomato	mitochondrion	1.86	3.7

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	InterPro:E3_UB_ligase_RBR	GO:GO:0000151	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624
GO:GO:0032436	GO:GO:0042787	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR013083	UniProt:K4B3E1	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150
SMART:SM00647	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g109280.2	EnsemblPlants:Solyc01g109280.2.1	UniParc:UPI0002768807	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:96272561..96279624

Molecular Weight (calculated)

67734.7 Da

IEP (calculated)

5.442

GRAVY (calculated)

-0.589

Length

590 amino acids

Sequence
(BLAST)

001: MEDYGSSDED TYSSDQESYD GLENEETDSQ WGSSTGNSCK VITRESLLVA QREDLRRVMD LLSLREHHAR TLLIHYRWDV ERLFAILVEK GKTCLFAEAG
101: VTILEEIDVD SSVSSSTMMC GICMEEVAGS EVTKMDCGHC FCNDCWTEHF IVKIKEGQSK RIRCMAHKCF AICDEAVIRK LVSKRHPDLA EKFDRFLLES
201: YIEDNKMVKW CPSIPHCGNA IRVETDEFCE VECSCGLQFC FSCLSEAHSP CSCWMWELWT KKCRDESETV NWITVHTKPC PKCHKPVEKN GGCNLVSCIC
301: GQAFCWLCGG ATGRDHTWSS IAGHSCGRYK EDQEKKSERA KRDLYRYMHY HNRYKAHTDS FTQESRLRET IKEKVANLES RDSRLRDFSW VTNGLYRLFR
401: SRRALSFSYP FAFYMFGDDL FKDEMTNEEK EIKQHLFEDQ QQQLEANVEK LSKVFEDPFD SFEETEIMEM RMQVLNLSVV TDKLCKKMYE CIETDLLGAL
501: QFSSHNIAPY QSKGIERATE LNGGRNAKAN NNITCQKAHD QTNGGSIELV HPSGCGTSDE SGCSSRKRTR EDSGGSFFDL NLPAELIDRN

Best Arabidopsis Sequence Match ( AT2G16090.4 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGWTSR LDQALESGKS EDTSCSSGKR ARIDESYRNS QTTLLDLNLP AEAIERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.