Factsheet for Os03t0625800-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G071800.1	Wheat	nucleus	66.85	65.76
TraesCS4A01G243200.1	Wheat	nucleus	66.48	65.51
TraesCS4D01G070600.1	Wheat	nucleus	64.81	65.06
Zm00001d013716_P002	Maize	nucleus	62.78	63.48
EER93790	Sorghum	nucleus	62.59	62.36
Os03t0625933-00	Rice	nucleus	37.22	61.09
HORVU4Hr1G011910.1	Barley	cytosol, plastid	66.67	58.82
Os03t0626100-01	Rice	nucleus	55.37	52.46
Solyc04g079780.2.1	Tomato	cytosol	41.3	42.72
PGSC0003DMT400043486	Potato	cytosol	40.93	42.42
Bra001960.1-P	Field mustard	nucleus	43.52	40.38
CDY49559	Canola	nucleus	43.52	40.38
GSMUA_Achr5P01850_001	Banana	nucleus	40.19	40.26
PGSC0003DMT400039948	Potato	nucleus	40.37	40.15
CDX71262	Canola	nucleus	43.15	40.1
Solyc12g089000.1.1	Tomato	nucleus	39.81	40.04
AT3G27710.1	Thale cress	nucleus	39.81	40.04
VIT_18s0001g11740.t01	Wine grape	cytosol	40.74	39.64
Os03t0233500-01	Rice	nucleus	44.63	39.38
PGSC0003DMT400064832	Potato	nucleus	42.78	39.15
Solyc01g109280.2.1	Tomato	nucleus	42.59	38.98
CDY49768	Canola	nucleus	34.63	38.96
Bra011524.1-P	Field mustard	nucleus	42.59	38.92
CDX75425	Canola	nucleus	42.59	38.92
VIT_03s0063g02000.t01	Wine grape	nucleus	42.41	38.88
Bra039068.1-P	Field mustard	nucleus	37.41	38.55
CDX69049	Canola	nucleus	42.59	38.53
AT4G34370.1	Thale cress	nucleus	42.41	38.36
Bra033024.1-P	Field mustard	nucleus	37.22	38.21
CDY20037	Canola	nucleus	37.04	38.17
KRH29521	Soybean	nucleus	40.93	38.1
KRH24517	Soybean	nucleus	40.93	38.1
CDY03991	Canola	nucleus	34.07	38.02
AT2G16090.1	Thale cress	nucleus	41.48	37.77
CDY00148	Canola	nucleus	33.7	37.6
AT3G27720.1	Thale cress	nucleus	31.48	34.48
Os04t0492100-01	Rice	nucleus	21.85	25.0
Os08t0540300-01	Rice	nucleus	24.63	21.91
Os09t0559000-00	Rice	cytosol	21.11	21.71
Os09t0513800-01	Rice	cytosol, mitochondrion, nucleus	21.85	21.69
Os09t0559100-00	Rice	nucleus	6.3	17.26

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:4333494	ProteinID:AAR01647.1	ProteinID:ABF97709.1
ProteinID:BAF12611.1	ProteinID:BAS85339.1	ncoils:Coil	InterPro:E3_UB_ligase_RBR	ProteinID:EAZ27839.1	GO:GO:0000151
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031624	GO:GO:0032436	GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlantsGene:Os03g0625800	EnsemblPlants:Os03t0625800-01	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685
PANTHER:PTHR11685:SF150	UniProt:Q75LV6	SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI00001D8EB0	RefSeq:XP_015628793.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

Zinc finger, C6HC-type domain containing protein. (Os03t0625800-01)

Coordinates

chr3:+:23812565..23816582

Molecular Weight (calculated)

61196.6 Da

IEP (calculated)

5.376

GRAVY (calculated)

-0.444

Length

540 amino acids

Sequence
(BLAST)

001: MASDRRYYYF EEDDGDGEEE VEWLAMEADE DDVGLLEEDD LHLRLPDDRP ADCWAITQES LPAAQQQDLS MVMNLLNIKQ HLARTLLIHH RWKMHCIYDH
101: LDRKGRDRML SEACIILPKN SMSAASSTSV TCNVCFEDFS MTDVSTMDCG HCFCNDCWTE HFFASINTGN KQIRCMEVKC KAICDEDIVR RLLSLKYPAA
201: SKRFDLLLLE SYLEDNDSVK WCPSAPHCGR AIQVGTGERY CEVACPCGVS FCFNCAGQVH SPCPCAIWEK WKAKGHGDSD SVKWILANTK SCPKCSKPIE
301: KNGGCNLVHC KCGQCLCWLC GGPTGREHTW DSISGHSCNR YKEENGDKVD TSRQQMQRYT HYWDRYNIHA GSYKVEQKDL GPAVEEQVKK LESNLTGPKM
401: NWDGSWLAMA YQSLLASRQV LSRSYAFAYY MFGGGEVKTH PSERASLAVA QNLFEDRQEQ LERHVEHLSK ELATDLLGLP EEEIVLKKVE IANLAKIVQA
501: ICGQLYRCIQ DELLPLLVQP MNIAAYQPDG PDKAKEFIGA

Best Arabidopsis Sequence Match ( AT4G34370.1 )
(BLAST)

001: MDDYFSAEEE ACYYSSDQDS LDGIDNEESE LQPLSSKRSN TQVITQESLL AAQREDLLRV MELLSIKEHH ARTLLIHYQW DVEKLFAVFV EKGKDSLFSG
101: AGVTVFDYQY GNSSFPQSSQ MSCDVCMEDL PGDHMTRMDC GHCFCNNCWT EHFTVQINEG QSKRIRCMAH QCNAICDEDI VRSLVSKKRP DLAAKFDRYL
201: LESYIEDNRM VKWCPSTPHC GNAIRAEDDK LCEVECSCGL QFCFSCLCQA HSPCSCLMWE LWRKKCRDES ETINWITVHT KLCPKCYKPV EKNGGCNLVR
301: CICGQCFCWL CGGATGSDHT YRSIAGHSCG RYQDDKEKQM ERAKRDLNRY THYHHRYKAH TDSSKLEDKL RDTIHEKVSK SEKRELKLKD FSWVTNGLDR
401: LFRSRRVLSY SYAFAYYMFG EEMFKDEMTP EEREIKKNLF EDQQQQLESN VEKLSQFLEE PFDEFSNDKV MAIRIQIINL SVAVDTLCKK MYECIENDLL
501: GSLQLGIHNI SPYRSKGIEQ AAQFYASWNS KDADKFQPLD SGTSGVTSRP EQASGSRSSE DTICSSSQKR PKKEGSFLNN KVTLLDLNLP ADFVDQN

Arabidopsis Description

ARI1Probable E3 ubiquitin-protein ligase ARI1 [Source:UniProtKB/Swiss-Prot;Acc:Q949V6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.