Factsheet for Zm00001d013716_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93790	Sorghum	nucleus	85.39	84.13
TraesCS4A01G243200.1	Wheat	nucleus	65.54	63.87
TraesCS4D01G070600.1	Wheat	nucleus	64.04	63.57
TraesCS4B01G071800.1	Wheat	nucleus	65.17	63.39
Os03t0625800-01	Rice	cytosol	63.48	62.78
HORVU4Hr1G011910.1	Barley	cytosol, plastid	65.54	57.19
Solyc04g079780.2.1	Tomato	cytosol	39.7	40.61
PGSC0003DMT400043486	Potato	cytosol	39.51	40.5
GSMUA_Achr5P01850_001	Banana	nucleus	40.07	39.7
CDX71262	Canola	nucleus	42.88	39.41
Solyc12g089000.1.1	Tomato	nucleus	39.51	39.29
PGSC0003DMT400039948	Potato	nucleus	39.89	39.23
VIT_18s0001g11740.t01	Wine grape	cytosol	40.45	38.92
AT4G34370.1	Thale cress	nucleus	43.45	38.86
CDY49559	Canola	nucleus	42.32	38.83
Bra001960.1-P	Field mustard	nucleus	42.32	38.83
CDX75425	Canola	nucleus	42.88	38.75
Bra011524.1-P	Field mustard	nucleus	42.88	38.75
CDY49768	Canola	nucleus	34.64	38.54
CDX69049	Canola	nucleus	43.07	38.53
AT3G27710.1	Thale cress	nucleus	38.58	38.36
PGSC0003DMT400064832	Potato	nucleus	42.32	38.31
Solyc01g109280.2.1	Tomato	nucleus	42.13	38.14
KRH29521	Soybean	nucleus	41.39	38.1
VIT_03s0063g02000.t01	Wine grape	nucleus	41.95	38.03
Zm00001d028285_P003	Maize	nucleus	44.01	37.9
CDY03991	Canola	nucleus	34.27	37.81
CDY00148	Canola	nucleus	34.27	37.81
KRH24517	Soybean	nucleus	41.01	37.76
AT2G16090.1	Thale cress	nucleus	41.76	37.61
Bra033024.1-P	Field mustard	nucleus	36.7	37.26
Bra039068.1-P	Field mustard	nucleus	36.52	37.21
CDY20037	Canola	nucleus	36.14	36.83
AT3G27720.1	Thale cress	nucleus	31.84	34.48
Zm00001d048017_P003	Maize	nucleus	44.19	30.85
Zm00001d025750_P011	Maize	extracellular	25.09	22.75
Zm00001d003207_P001	Maize	nucleus	24.91	22.58
Zm00001d046141_P001	Maize	cytosol	11.98	22.54
Zm00001d052709_P002	Maize	plastid	20.04	21.79
Zm00001d048683_P001	Maize	nucleus	23.41	21.37
Zm00001d031694_P003	Maize	nucleus	25.84	21.1
Zm00001d007709_P003	Maize	nucleus	23.78	12.34

Protein Annotations

Gene3D:1.20.120.1750	EntrezGene:100279995	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	ProteinID:AQK64214.1	UniProt:B8A106
EMBL:BT055248	EMBL:BT055305	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	GO:GO:0046872	InterPro:IBR_dom	InterPro:IPR001841
InterPro:IPR013083	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647
SUPFAM:SSF57850	UniParc:UPI00019177B2	EnsemblPlantsGene:Zm00001d013716	EnsemblPlants:Zm00001d013716_P002	EnsemblPlants:Zm00001d013716_T002	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Probable E3 ubiquitin-protein ligase ARI2

Coordinates

chr5:-:18304759..18308806

Molecular Weight (calculated)

60608.7 Da

IEP (calculated)

5.697

GRAVY (calculated)

-0.474

Length

534 amino acids

Sequence
(BLAST)

001: MTSDDEEACD YFYDDDDDAE EDAAAGLEED SSLPTPEGRA DYWAITQDTV FAAQKQDLST VMNLLNINQH QARALLIHHR WSMDGIYDSL DMGRERMLRN
101: SGIVLQEVNS IAAAGSMTPW RTVTCKVCFE DFSMDAVSTM DCGHCFCNDC WTEYFHAAVE SGKKQIRCME VKCSAFCDED LVRFLLVQKY PDMAKNFNRF
201: LLGSYLEDNA SVKWCPSTPN CGHAIRVGTD ERCCEVECPC GLSFCFNCMG HAHSPCPCTI WEKWNASRSE GENIKWILAN TKSCPKCFKA IEKNGGCNLV
301: RCKCGQCMCW LCGGGTGQDH TWNSITGHSC NRYEEEICVE TVHTGRQQMQ RYKHYHDRFK IHGDSSYGVE KQKLGAAIEE RVRLLESDRE RPLAIRDGDW
401: LTRAHRRLLV SRQVLSRSYV FAYYMFGGHE LRTRPAERAN LGVARNLFEH QQEQLERHVE HLSRSLAESA DLAGAPDAEI VKQKQTAITL TKTVERLCGE
501: MYKCIQDELL TLLVEPMSIA AYRPDGPDRA KPAI

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.