Factsheet for GSMUA_Achr5P01850_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g11740.t01	Wine grape	cytosol	50.65	49.19
PGSC0003DMT400043486	Potato	cytosol	47.31	48.94
Solyc04g079780.2.1	Tomato	cytosol	46.94	48.47
KRH24517	Soybean	nucleus	52.13	48.45
PGSC0003DMT400039948	Potato	nucleus	48.79	48.43
KRH29521	Soybean	nucleus	51.76	48.1
VIT_03s0063g02000.t01	Wine grape	nucleus	52.32	47.88
Solyc01g109280.2.1	Tomato	nucleus	52.13	47.63
CDY49559	Canola	nucleus	51.39	47.59
PGSC0003DMT400064832	Potato	nucleus	51.95	47.46
Bra001960.1-P	Field mustard	nucleus	51.21	47.42
Solyc12g089000.1.1	Tomato	nucleus	47.12	47.3
CDX71262	Canola	nucleus	50.46	46.82
GSMUA_Achr6P23120_001	Banana	nucleus	55.84	46.81
CDY00148	Canola	nucleus	41.74	46.49
AT2G16090.1	Thale cress	nucleus	50.83	46.21
Bra039068.1-P	Field mustard	nucleus	44.9	46.18
AT3G27710.1	Thale cress	nucleus	45.83	46.0
CDY20037	Canola	nucleus	44.71	45.99
CDX75425	Canola	nucleus	48.98	44.67
Bra011524.1-P	Field mustard	nucleus	48.98	44.67
CDY49768	Canola	nucleus	39.7	44.58
CDX69049	Canola	nucleus	49.17	44.39
AT4G34370.1	Thale cress	nucleus	48.98	44.22
CDY03991	Canola	nucleus	39.52	44.01
Bra033024.1-P	Field mustard	nucleus	42.67	43.73
AT3G27720.1	Thale cress	nucleus	38.22	41.78
Os03t0625933-00	Rice	nucleus	25.23	41.34
TraesCS4D01G070400.1	Wheat	nucleus	39.89	40.26
Os03t0625800-01	Rice	cytosol	40.26	40.19
Zm00001d013716_P002	Maize	nucleus	39.7	40.07
TraesCS4A01G243200.1	Wheat	nucleus	40.45	39.78
TraesCS4D01G070600.1	Wheat	nucleus	39.7	39.78
EER93787	Sorghum	nucleus	39.33	39.63
TraesCS4B01G071800.1	Wheat	nucleus	40.26	39.53
TraesCS4D01G069600.1	Wheat	nucleus	39.15	39.51
TraesCS4B01G070800.1	Wheat	nucleus	39.15	39.37
TraesCS4A01G244200.1	Wheat	nucleus	39.15	39.37
EER93790	Sorghum	nucleus	39.52	39.3
TraesCS4B01G071700.1	Wheat	nucleus	38.96	38.82
HORVU4Hr1G011770.1	Barley	nucleus	38.03	38.17
HORVU4Hr1G011910.1	Barley	cytosol, plastid	41.19	36.27
Os03t0626100-01	Rice	nucleus	36.73	34.74
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	28.39	29.88
GSMUA_Achr6P28580_001	Banana	nucleus	28.39	27.32
GSMUA_Achr9P07970_001	Banana	nucleus	27.27	26.63
GSMUA_Achr8P28870_001	Banana	nucleus	28.94	26.58
GSMUA_Achr3P16920_001	Banana	nucleus	27.83	25.55

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	ncoils:Coil	InterPro:E3_UB_ligase_RBR	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr5G01850_001
EnsemblPlants:GSMUA_Achr5P01850_001	EnsemblPlants:GSMUA_Achr5T01850_001	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	UniProt:M0SUW4
PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	SMART:SM00647	SUPFAM:SSF57850
UniParc:UPI0002953714	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Probable E3 ubiquitin-protein ligase ARI2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01850_001]

Coordinates

chr5:-:1108564..1112137

Molecular Weight (calculated)

62359.7 Da

IEP (calculated)

4.856

GRAVY (calculated)

-0.490

Length

539 amino acids

Sequence
(BLAST)

001: MDDDDYYFDE SDGDYGGSSY SLEEYHGDDL NDILVEEPIE KIWTTASVIS AESLLAAQKE VLQNVMSLLL INEQQARSLL IYYRWNVQKV YDSFERKGKE
101: PLFQEAGVVI SDDRDLDILG SSTAVITCNV CFEDVAVLDA TKMDCGHLFC NDCWTQNFII RIKDGERTIR CMDTKCNAIC DDVIIRNLVS RKDPCLAERF
201: ERFLLESYVE DNDNIKWCPS NPHCGNAIRV DGSNVFEVEC ICGFQFCFNC SLEAHSPCSC QMWKLWVQKC GDESGNTDWI MVNTKPCPKC NKLVEKNGGC
301: NLVRCRCDQH FCWLCGGACG AEHTWSTITG HTCNSFTREK EMSYLAVKQR LQRYMHYYNR YMTHADSLKK ENTLNENIQR KISESENKNS MIKDYSWVLE
401: GSRQLLRSRR VLKYTYPLAF YVFGDELFKD KMTPEEKEIK QHLFEDLQQQ LETNVERLSM YIEKDFYDFN DEQVIQLKYQ VVNLNRVVNK FCGQMYKYIE
501: DDLLEPMKHA VHRIAPYSSG GPNMLLQPSS SSSGNSGHS

Best Arabidopsis Sequence Match ( AT2G16090.4 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGWTSR LDQALESGKS EDTSCSSGKR ARIDESYRNS QTTLLDLNLP AEAIERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.