Factsheet for Os03t0233500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G066180.1	Barley	nucleus	91.18	90.0
TraesCS4D01G238400.2	Wheat	nucleus	90.52	89.35
TraesCS4B01G236900.1	Wheat	nucleus	90.52	89.35
TraesCS4A01G061500.1	Wheat	nucleus	90.36	89.19
EER92613	Sorghum	nucleus	86.6	87.75
Zm00001d028285_P003	Maize	nucleus	85.13	84.03
HORVU7Hr1G068450.2	Barley	nucleus	34.8	83.2
HORVU1Hr1G018020.1	Barley	cytosol	23.37	77.72
GSMUA_Achr6P23120_001	Banana	nucleus	75.0	71.38
Zm00001d048017_P003	Maize	nucleus	83.17	66.54
VIT_03s0063g02000.t01	Wine grape	nucleus	61.11	63.5
KRH24517	Soybean	nucleus	60.13	63.45
KRH29521	Soybean	nucleus	59.97	63.28
PGSC0003DMT400064832	Potato	nucleus	60.46	62.71
Solyc01g109280.2.1	Tomato	nucleus	59.97	62.2
CDY49559	Canola	nucleus	58.66	61.68
Bra001960.1-P	Field mustard	nucleus	58.66	61.68
AT2G16090.1	Thale cress	nucleus	59.64	61.55
CDX71262	Canola	nucleus	57.68	60.76
VIT_18s0001g11740.t01	Wine grape	cytosol	54.25	59.82
CDX75425	Canola	nucleus	56.37	58.38
Bra011524.1-P	Field mustard	nucleus	56.37	58.38
CDX69049	Canola	nucleus	56.37	57.79
AT4G34370.1	Thale cress	nucleus	56.21	57.62
PGSC0003DMT400043486	Potato	cytosol	48.37	56.81
Solyc04g079780.2.1	Tomato	cytosol	47.88	56.13
AT3G27710.1	Thale cress	nucleus	47.55	54.19
PGSC0003DMT400039948	Potato	nucleus	47.71	53.78
Solyc12g089000.1.1	Tomato	nucleus	46.9	53.45
CDY49768	Canola	nucleus	41.18	52.5
Bra039068.1-P	Field mustard	nucleus	44.44	51.91
CDY03991	Canola	nucleus	41.01	51.86
CDY20037	Canola	nucleus	43.95	51.34
Bra033024.1-P	Field mustard	nucleus	43.63	50.76
AT3G27720.1	Thale cress	nucleus	40.69	50.51
CDY00148	Canola	nucleus	39.87	50.41
Os03t0625800-01	Rice	cytosol	39.38	44.63
Os03t0625933-00	Rice	nucleus	23.04	42.86
Os03t0626100-01	Rice	nucleus	36.44	39.12
Os04t0492100-01	Rice	nucleus	20.75	26.91
Os08t0540300-01	Rice	nucleus	25.65	25.86
Os09t0559000-00	Rice	cytosol	21.73	25.33
Os09t0513800-01	Rice	cytosol, mitochondrion, nucleus	21.57	24.26
Os09t0559100-00	Rice	nucleus	6.54	20.3

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	EntrezGene:4332164	ProteinID:ABF94817.1	ProteinID:BAF11388.1
ProteinID:BAS83128.1	InterPro:E3_UB_ligase_RBR	ProteinID:EEE58654.1	GO:GO:0000151	GO:GO:0000209	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031624	GO:GO:0032436
GO:GO:0046872	GO:GO:0061630	InterPro:IBR_dom	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os03g0233500
EnsemblPlants:Os03t0233500-01	PFAM:PF01485	PFscan:PS50089	PANTHER:PTHR11685	PANTHER:PTHR11685:SF150	UniProt:Q10PH9
SMART:SM00647	SUPFAM:SSF57850	UniParc:UPI0000DB4547	RefSeq:XP_015629775.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Zinc finger, C6HC-type domain containing protein. (Os03t0233500-01)

Coordinates

chr3:+:7074684..7078859

Molecular Weight (calculated)

70138.1 Da

IEP (calculated)

5.214

GRAVY (calculated)

-0.690

Length

612 amino acids

Sequence
(BLAST)

001: MVTDAEEVSP TASSSELEQE DDDDDCYLSD QEDDALEESV LQVLEDERDE DCHWSSTSVI TKESLLAAQR EDLRKVMELL GLREHHARTL LIHYRWDVER
101: IFELLDQKGR DRLFSEAGIP LQPANNPGSP SSTEVTCNVC YDDVPLSDAS KMDCGHNYCN ECWTGYFIVK INEGQSRRIK CMALKCNTIC DEAIVRKLVN
201: AKRPDIAERF ERFLLESYIE DNDTVKWCPS TPHCGNAIRV KGDIHCEVEC TCGRQFCFNC SSEAHSPCSC VMWELWIKKC RDESETVNWI TVNTKPCPKC
301: HKPVEKNGGC NLVACICGQA FCWLCGGATG RDHTWSSISG HSCGRFTEDQ SKKTEQARRN LYRYMHYHNR YKAHTDSLKQ EAKLKGDIQG KISISENKDS
401: KIKDYSWVIN GLNRLFRSRR VLSYSYPFAF YMFGDEIFKD EMTSDERELK QNLFEDQQQQ LEFNVERLSG FLERDFQNFS DDEVMDTMKH VINLSNVVDR
501: LCKQMYQCIE NDLLYPLRTP HNIAPYKSKG LDRASELNVC WDSSEQGLQP IKYSQDEHKS QPGLSGSSIF GKRQLGSSSN NNGRPHKRER NDAHGGAALF
601: DLNVPAEVAD KI

Best Arabidopsis Sequence Match ( AT2G16090.1 )
(BLAST)

001: MDDNLSGEEE DYYYSSDQES LNGIDNDESV SIPVSSRSNT VKVITKESLL AAQREDLRRV MELLSVKEHH ARTLLIHYRW DVEKLFAVLV EKGKDSLFSG
101: AGVTLLENQS CDSSVSGSSS MMSCDICVED VPGYQLTRMD CGHSFCNNCW TGHFTVKINE GQSKRIICMA HKCNAICDED VVRALVSKSQ PDLAEKFDRF
201: LLESYIEDNK MVKWCPSTPH CGNAIRVEDD ELCEVECSCG LQFCFSCSSQ AHSPCSCVMW ELWRKKCFDE SETVNWITVH TKPCPKCHKP VEKNGGCNLV
301: TCLCRQSFCW LCGEATGRDH TWARISGHSC GRFQEDKEKQ MERAKRDLKR YMHYHNRYKA HIDSSKLEAK LSNNISKKVS ISEKRELQLK DFSWATNGLH
401: RLFRSRRVLS YSYPFAFYMF GDELFKDEMS SEEREIKQNL FEDQQQQLEA NVEKLSKFLE EPFDQFADDK VMQIRIQVIN LSVAVDTLCE NMYECIENDL
501: LGSLQLGIHN ITPYRSNGIE RASDFYSSQN SKEAVGQSSD CGWTSRLDQA LESGKSEDTS CSSGKRARID ESYRNSQTTL LDLNLPAEAI ERK

Arabidopsis Description

ARI2Probable E3 ubiquitin-protein ligase ARI2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.