Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g073340.2.1 | Tomato | nucleus | 47.7 | 45.27 |
| Solyc11g008580.1.1 | Tomato | nucleus | 47.7 | 42.13 |
| Solyc01g044340.2.1 | Tomato | cytosol | 8.05 | 30.66 |
| Solyc01g109280.2.1 | Tomato | nucleus | 25.29 | 22.37 |
| Solyc04g079780.2.1 | Tomato | cytosol | 22.22 | 22.22 |
| Solyc12g089000.1.1 | Tomato | nucleus | 22.41 | 21.79 |
| Solyc01g044350.2.1 | Tomato | mitochondrion | 2.49 | 4.38 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | InterPro:E3_UB_ligase_RBR | GO:GO:0000151 | GO:GO:0000209 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031624 |
| GO:GO:0032436 | GO:GO:0042787 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IBR_dom | InterPro:IPR001876 |
| InterPro:IPR013083 | UniProt:K4ASD1 | PFAM:PF01485 | ScanProsite:PS01358 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF211 |
| SMART:SM00647 | SUPFAM:SSF57850 | SUPFAM:SSF90209 | EnsemblPlantsGene:Solyc01g005650.1 | EnsemblPlants:Solyc01g005650.1.1 | UniParc:UPI0002761CD4 |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1:-:455379..456988
Molecular Weight (calculated)
61481.6 Da
IEP (calculated)
5.152
GRAVY (calculated)
-0.709
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDHEFYDM YSADEEEDSN NVDESNIVTY EQKNYKILKD FDIRQLVKED ISKISAILSV PRDVSLALLR RYNWKVDRAN EEWFANEQEV RKSIGMFLCD
101: NDNNNYVPVS KKSKKNDNIV NCGICFEEYN DVVYATCRKH PFCKLCWEKY IGASINYSGP NKCLALRCPD PSCEAMVGES IIVELASEID KSKYYDYLFR
201: SYIEENKKTK WCPYPGCECA IEFEIGSDDY SVIYSNCDMV AKWKYVNEEE SANTNWFRTF TKKCPECDRS IEKNMGCMHM TCRCGYQFCW LCFKEWGVCA
301: SRCNRYEEKK EVTNAKKKIE RYTHYYERWL SNGKSKDKAL NDLKEMKEEG LKKLSDDNSL HKEELGFIIE AWKQIVECRR VLKWTYAYGF YLPKEEEAKT
401: QFFEYLQGEA EAGLERLHHC VEKDLMKHLG SDEMDYTDKG SYKKFANFRS RVIGLTKITR NYFEKLVMAL ENGLEDVTNN PTKKIEQPMS SNSTSNNIMW
501: MCDRCTFLNE DIHTVCQMCI ED
101: NDNNNYVPVS KKSKKNDNIV NCGICFEEYN DVVYATCRKH PFCKLCWEKY IGASINYSGP NKCLALRCPD PSCEAMVGES IIVELASEID KSKYYDYLFR
201: SYIEENKKTK WCPYPGCECA IEFEIGSDDY SVIYSNCDMV AKWKYVNEEE SANTNWFRTF TKKCPECDRS IEKNMGCMHM TCRCGYQFCW LCFKEWGVCA
301: SRCNRYEEKK EVTNAKKKIE RYTHYYERWL SNGKSKDKAL NDLKEMKEEG LKKLSDDNSL HKEELGFIIE AWKQIVECRR VLKWTYAYGF YLPKEEEAKT
401: QFFEYLQGEA EAGLERLHHC VEKDLMKHLG SDEMDYTDKG SYKKFANFRS RVIGLTKITR NYFEKLVMAL ENGLEDVTNN PTKKIEQPMS SNSTSNNIMW
501: MCDRCTFLNE DIHTVCQMCI ED
001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
Arabidopsis Description
ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.