Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g047770.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G65430.1 | Solyc07g047770.2.1 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0207g00090.t01 | Wine grape | nucleus | 82.74 | 83.3 |
| AT1G65430.1 | Thale cress | nucleus | 71.74 | 74.78 |
| Solyc06g073340.2.1 | Tomato | nucleus | 69.37 | 74.55 |
| CDY16406 | Canola | nucleus | 67.85 | 73.31 |
| Bra022479.1-P | Field mustard | nucleus | 69.71 | 73.05 |
| CDY57807 | Canola | nucleus | 69.71 | 73.05 |
| Solyc01g005650.1.1 | Tomato | nucleus | 42.13 | 47.7 |
| Solyc01g044340.2.1 | Tomato | cytosol | 8.8 | 37.96 |
| Solyc04g079780.2.1 | Tomato | cytosol | 23.86 | 27.01 |
| Solyc01g109280.2.1 | Tomato | nucleus | 25.89 | 25.93 |
| Solyc12g089000.1.1 | Tomato | nucleus | 23.35 | 25.7 |
| Solyc01g044350.2.1 | Tomato | mitochondrion | 4.57 | 9.09 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:2.20.28.140 | Gene3D:3.30.40.10 | InterPro:E3_UB_ligase_RBR | GO:GO:0000151 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0031624 | GO:GO:0032436 | GO:GO:0042787 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IBR_dom |
| InterPro:IPR001841 | InterPro:IPR001876 | InterPro:IPR013083 | UniProt:K4D5B8 | PFAM:PF01485 | ScanProsite:PS01358 |
| PFscan:PS50089 | PFscan:PS50199 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF177 | SMART:SM00547 | SMART:SM00647 |
| SUPFAM:SSF57850 | SUPFAM:SSF90209 | EnsemblPlantsGene:Solyc11g008580.1 | EnsemblPlants:Solyc11g008580.1.1 | UniParc:UPI000276AA4C | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | SEG:seg | : | : |
Description
Probable E3 ubiquitin-protein ligase ARI8 [Source:Projected from Arabidopsis thaliana (AT1G65430) UniProtKB/Swiss-Prot;Acc:Q8W468]
Coordinates
chr11:-:2764823..2775320
Molecular Weight (calculated)
66958.8 Da
IEP (calculated)
5.049
GRAVY (calculated)
-0.659
Length
591 amino acids
Sequence
(BLAST)
(BLAST)
001: MASEDELMMQ DATDDGESFD DDFYSGGDVH DDSDDDDVMD YDFIDNDSDD SDTVIAHHRS QSNYSILNEA DIHKCQEESI TKISTVLSIP RVAAGILLRH
101: YNWSVSKVND EWFADEGKVR RIVGLLENHV PLPDGEELTC GICFDVYPRK EISAAACGHP FCFTCWQGYI STSITDGPGC LMLRCPDPSC SAAIGLDMIN
201: KLASDDDKKK YNRYFIRSFV EDNRKTKWCP APGCDYAVDY IVGSGSYDVT CGCSYSFCWN CTEETHRPVD CGTVSKWILK NSAESENMNW ILANSKPCPK
301: CKRPIEKNQG CMHITCTPPC KFEFCWLCLG PWTDHGERTG GFYACNRYES AKQDGVFDES EKRREMAKNS LERYTHYYER WATNQSSRQK ALSDLQQMQT
401: VHLEKLSDKQ CQPESQLKFI IEAWLQIVEC RRVLKWTYAY GYYLPEHEHA KRQFFEYLQG EAESGLERLH QCAEKELQGY LDAEGPSREF NEFRTKLAGL
501: TSVTRNYFEN LVRALENGLS DVDGHGAYSR AASSKSLGGG SIKGKGGRGK GATSRSSSSR NIDDSGHWSC EYCTYANVRS ATACQMCQQR R
101: YNWSVSKVND EWFADEGKVR RIVGLLENHV PLPDGEELTC GICFDVYPRK EISAAACGHP FCFTCWQGYI STSITDGPGC LMLRCPDPSC SAAIGLDMIN
201: KLASDDDKKK YNRYFIRSFV EDNRKTKWCP APGCDYAVDY IVGSGSYDVT CGCSYSFCWN CTEETHRPVD CGTVSKWILK NSAESENMNW ILANSKPCPK
301: CKRPIEKNQG CMHITCTPPC KFEFCWLCLG PWTDHGERTG GFYACNRYES AKQDGVFDES EKRREMAKNS LERYTHYYER WATNQSSRQK ALSDLQQMQT
401: VHLEKLSDKQ CQPESQLKFI IEAWLQIVEC RRVLKWTYAY GYYLPEHEHA KRQFFEYLQG EAESGLERLH QCAEKELQGY LDAEGPSREF NEFRTKLAGL
501: TSVTRNYFEN LVRALENGLS DVDGHGAYSR AASSKSLGGG SIKGKGGRGK GATSRSSSSR NIDDSGHWSC EYCTYANVRS ATACQMCQQR R
001: MEADDDFYSG TENYSDYADS DEDDADGEYE FVDDAADDSD DLIFRRRQQN YSVLSEADIC KLQEDDISRI STVLSISRNS SAILLRHYNW CVSRVHDEWF
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
101: ADEEKVRDAV GLLEKPVVDF PTDGELDCGI CFETFLSDKL HAAACGHPFC DSCWEGYITT AINDGPGCLT LRCPDPSCRA AVGQDMINLL APDKDKQKYT
201: SYFVRSYVED NRKTKWCPAP GCDYAVNFVV GSGNYDVNCR CCYSFCWNCA EEAHRPVDCD TVSKWVLKNS AESENMNWIL ANSKPCPKCK RPIEKNQGCM
301: HITCTPPCKF EFCWLCLGAW TEHGEKTGGF YACNRYEAAK QDGIYDETEK RREMAKNSLE RYTHYYERWA TNQSSRQKAL LDLKKMQTDD IEKLSDIQCQ
401: PESQLKFIIE AWLQIVECRR VLKWTYAYGF YIPDQEHGKR VFFEYLQGEA ESGLERLHQC AEKELLPYLD AKGPSEDFNE FRTKLAGLTS VTKNYFENLV
501: RALENGLSDV NSHDAYDRTS SSKSLGGKTK GSSSKASSSD SSHWPCEYCT YVNPRSTTIC QMCEHGR
Arabidopsis Description
ARI8ATARI8 [Source:UniProtKB/TrEMBL;Acc:A0A178WLP2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.