Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31353 | Canola | nucleus | 92.6 | 92.81 |
| CDY41534 | Canola | nucleus | 21.3 | 51.35 |
| CDY41533 | Canola | nucleus | 57.85 | 48.59 |
| AT5G63750.1 | Thale cress | nucleus | 53.36 | 44.4 |
| CDX84438 | Canola | cytosol | 36.55 | 44.29 |
| AT5G63760.2 | Thale cress | nucleus | 43.5 | 42.92 |
| AT5G63730.1 | Thale cress | cytosol | 47.76 | 42.09 |
| CDX84439 | Canola | nucleus | 58.07 | 39.48 |
| CDY40734 | Canola | nucleus | 34.75 | 32.49 |
| CDX99146 | Canola | nucleus | 32.06 | 32.06 |
| CDX99147 | Canola | nucleus | 25.34 | 31.92 |
| CDY44786 | Canola | nucleus | 34.3 | 31.74 |
| CDY21562 | Canola | nucleus | 37.89 | 25.45 |
| CDX69926 | Canola | cytosol, mitochondrion, nucleus | 36.1 | 23.99 |
| CDY68345 | Canola | cytosol | 20.63 | 20.96 |
| CDX78438 | Canola | nucleus | 22.87 | 20.61 |
| CDY68344 | Canola | nucleus | 22.42 | 20.08 |
| CDY16406 | Canola | nucleus | 24.44 | 19.93 |
| CDX79439 | Canola | nucleus | 14.57 | 19.88 |
| CDX70415 | Canola | nucleus | 23.32 | 19.81 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 22.65 | 19.73 |
| CDY57807 | Canola | nucleus | 24.89 | 19.68 |
| CDX79440 | Canola | cytosol | 7.4 | 19.3 |
| CDX84759 | Canola | nucleus | 22.42 | 19.19 |
| CDY63791 | Canola | nucleus | 23.77 | 19.17 |
| CDY15392 | Canola | nucleus | 23.77 | 19.03 |
| CDX86547 | Canola | nucleus | 23.54 | 18.95 |
| CDY19083 | Canola | nucleus | 23.54 | 18.92 |
| CDY23938 | Canola | nucleus | 23.32 | 18.67 |
| CDX84781 | Canola | nucleus | 23.09 | 18.59 |
| KRH24184 | Soybean | nucleus | 21.75 | 18.58 |
| CDY15374 | Canola | nucleus | 23.77 | 18.5 |
| CDY10162 | Canola | nucleus | 22.87 | 18.38 |
| CDY47704 | Canola | nucleus | 22.87 | 18.28 |
| CDX91196 | Canola | nucleus | 20.85 | 18.27 |
| CDY15373 | Canola | nucleus | 21.75 | 17.73 |
| CDY61443 | Canola | nucleus | 21.3 | 17.59 |
| CDY42068 | Canola | nucleus | 17.94 | 17.51 |
| CDY47702 | Canola | cytosol | 18.61 | 15.93 |
| CDY10159 | Canola | cytosol | 18.83 | 15.91 |
| CDY34490 | Canola | cytosol | 4.04 | 14.63 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 9.64 | 14.63 |
| CDY00148 | Canola | nucleus | 15.7 | 14.46 |
| CDX71262 | Canola | nucleus | 18.61 | 14.29 |
| CDY49559 | Canola | nucleus | 18.61 | 14.26 |
| CDY20037 | Canola | nucleus | 16.14 | 13.74 |
| CDY49768 | Canola | nucleus | 14.57 | 13.54 |
| CDY03991 | Canola | nucleus | 14.57 | 13.43 |
| CDX69049 | Canola | nucleus | 17.26 | 12.9 |
| CDX75425 | Canola | nucleus | 17.04 | 12.86 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:35.1 | GO:A0A078HMV2 | UniProt:A0A078HMV2 | EnsemblPlants:CDY39850 | ProteinID:CDY39850 |
| ProteinID:CDY39850.1 | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00068675001 | InterPro:IBR_dom | InterPro:IPR001876 | PFAM:PF01485 |
| ScanProsite:PS01358 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF213 | SMART:SM00647 | SUPFAM:SSF57850 | UniPathway:UPA00143 |
| UniParc:UPI0001B63A57 | InterPro:Znf_RanBP2 | : | : | : | : |
Description
BnaC02g42680DBnaC02g42680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMV2]
Coordinates
chrLK032458:+:222192..224075
Molecular Weight (calculated)
51239.7 Da
IEP (calculated)
5.154
GRAVY (calculated)
-0.374
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHDPEREYS VLTRDDLNEK MNKQIDDLSE IFLLSKPAAT VLLMNLQWDS QRVSERLSED KEKLLMRSGL ITDSNYNDSF FSVEKNLAML TLEAKGMHNE
101: YVLRSFLEQN KGLTIRRCPS PGCGYFIEFH RDIYFDEYGL NVVCLCGHTF CGRCSLESHR PVTCNNASDW LRDLGKLSES LSVSWIESNT KPCPHCQFPI
201: EVGSRSRLFR FVECLYCSGR LCSECMQTVE SHKTADGYYG ACVGPLLPQL ANGPEAVVVT CVDRWEASDV AMVEAKSELE SFDESHFTSQ EYIRNMREGL
301: MLIVQCRQFL KWSCVYDHVH TEYQASKREY LRFLQDFAST LVQSYSETLK EETVKAFSAT TYEETIYPKW KVANATSSIG NFFFHFSKTL EDGIDDVKVK
401: SYDNFGGPYW LCDRCTSGNT WLDMRCKMCC ASATPVEKKL RDLSIN
101: YVLRSFLEQN KGLTIRRCPS PGCGYFIEFH RDIYFDEYGL NVVCLCGHTF CGRCSLESHR PVTCNNASDW LRDLGKLSES LSVSWIESNT KPCPHCQFPI
201: EVGSRSRLFR FVECLYCSGR LCSECMQTVE SHKTADGYYG ACVGPLLPQL ANGPEAVVVT CVDRWEASDV AMVEAKSELE SFDESHFTSQ EYIRNMREGL
301: MLIVQCRQFL KWSCVYDHVH TEYQASKREY LRFLQDFAST LVQSYSETLK EETVKAFSAT TYEETIYPKW KVANATSSIG NFFFHFSKTL EDGIDDVKVK
401: SYDNFGGPYW LCDRCTSGNT WLDMRCKMCC ASATPVEKKL RDLSIN
001: MENNREGPYS VLTRDQLKGN MKKQIAEISE IFSLSKPDAT VLLMFLRWDS HEVSEFLVEN NEKVLSESGL KPVVVDPNQD LYKISSCGIC FKTCDDGDYL
101: ISTPFCSHMF CKSCWRKYLE KNFYLVEKTQ TRISCPHGAC QAAVGPDTIQ KLTVCDQEMY VEYILRSYIE GNKVLEIKYC PAQDCNYVIE FHQKNHDGAD
201: QEDYGFNVVC LCGHIFCWRC MLESHKPVTC NNASDWLFRD LNSLSKESGE KPLSLSSFET REKTYPLSSI KATKKVCPHC LRPADLGTKQ YLRFLTCACN
301: GRFCWKCMQP EEAHKTESGF YKFCNVSMTF EGRAPKTLEG RAEPENSCVG LWKASEVSLK QAKSDLQAFE ESNIKNPSDL TEKDFTIIRK GLMLIVQCRQ
401: VLKWSCVYDY LHAEYEMSKR EYLRFLQADA TSLVESFSKT LNEEIGRASS ATYENFCCVK HKVTIETSNI GNYFYHFIKT LQEGLDDVKV KSYDDYGGLF
501: WLCDRCTYGN TWFHKECLMC SDDIAARVDL SDMSLN
101: ISTPFCSHMF CKSCWRKYLE KNFYLVEKTQ TRISCPHGAC QAAVGPDTIQ KLTVCDQEMY VEYILRSYIE GNKVLEIKYC PAQDCNYVIE FHQKNHDGAD
201: QEDYGFNVVC LCGHIFCWRC MLESHKPVTC NNASDWLFRD LNSLSKESGE KPLSLSSFET REKTYPLSSI KATKKVCPHC LRPADLGTKQ YLRFLTCACN
301: GRFCWKCMQP EEAHKTESGF YKFCNVSMTF EGRAPKTLEG RAEPENSCVG LWKASEVSLK QAKSDLQAFE ESNIKNPSDL TEKDFTIIRK GLMLIVQCRQ
401: VLKWSCVYDY LHAEYEMSKR EYLRFLQADA TSLVESFSKT LNEEIGRASS ATYENFCCVK HKVTIETSNI GNYFYHFIKT LQEGLDDVKV KSYDDYGGLF
501: WLCDRCTYGN TWFHKECLMC SDDIAARVDL SDMSLN
Arabidopsis Description
ARI13Probable E3 ubiquitin-protein ligase ARI13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.