Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038658.1-P | Field mustard | nucleus | 93.21 | 79.4 |
| CDY41533 | Canola | nucleus | 68.21 | 47.27 |
| AT5G63730.1 | Thale cress | cytosol | 56.79 | 41.3 |
| AT5G63750.1 | Thale cress | nucleus | 55.98 | 38.43 |
| CDY31353 | Canola | nucleus | 44.57 | 36.85 |
| CDY39850 | Canola | nucleus | 44.29 | 36.55 |
| AT5G63760.2 | Thale cress | nucleus | 44.02 | 35.84 |
| CDX99147 | Canola | nucleus | 33.7 | 35.03 |
| CDX99146 | Canola | nucleus | 41.03 | 33.86 |
| CDY41534 | Canola | nucleus | 16.85 | 33.51 |
| CDX84439 | Canola | nucleus | 54.62 | 30.64 |
| CDY40734 | Canola | nucleus | 39.4 | 30.4 |
| CDY44786 | Canola | nucleus | 38.59 | 29.46 |
| CDY21562 | Canola | nucleus | 42.12 | 23.34 |
| CDX79439 | Canola | nucleus | 19.84 | 22.32 |
| CDX69926 | Canola | cytosol, mitochondrion, nucleus | 39.13 | 21.46 |
| CDY42068 | Canola | nucleus | 26.09 | 21.01 |
| CDX70415 | Canola | nucleus | 28.8 | 20.19 |
| CDY68345 | Canola | cytosol | 23.64 | 19.82 |
| CDY68344 | Canola | nucleus | 26.63 | 19.68 |
| CDX84759 | Canola | nucleus | 26.9 | 19.0 |
| CDY63791 | Canola | nucleus | 28.26 | 18.81 |
| CDY19083 | Canola | nucleus | 28.26 | 18.74 |
| CDY15392 | Canola | nucleus | 28.26 | 18.67 |
| CDY10162 | Canola | nucleus | 27.99 | 18.56 |
| CDY23938 | Canola | nucleus | 27.99 | 18.49 |
| CDY47704 | Canola | nucleus | 27.99 | 18.46 |
| CDX84781 | Canola | nucleus | 27.72 | 18.41 |
| CDX86547 | Canola | nucleus | 27.72 | 18.41 |
| KRH24184 | Soybean | nucleus | 26.09 | 18.39 |
| CDY16406 | Canola | nucleus | 27.17 | 18.28 |
| CDX78438 | Canola | nucleus | 24.46 | 18.18 |
| CDY15373 | Canola | nucleus | 26.9 | 18.1 |
| CDY57807 | Canola | nucleus | 27.45 | 17.91 |
| CDX91196 | Canola | nucleus | 24.73 | 17.88 |
| CDY61443 | Canola | nucleus | 26.09 | 17.78 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 24.18 | 17.38 |
| CDY15374 | Canola | nucleus | 26.9 | 17.28 |
| CDX79440 | Canola | cytosol | 7.88 | 16.96 |
| CDY47702 | Canola | cytosol | 23.64 | 16.7 |
| CDY10159 | Canola | cytosol | 23.37 | 16.29 |
| CDY20037 | Canola | nucleus | 19.84 | 13.93 |
| CDY00148 | Canola | nucleus | 17.93 | 13.64 |
| CDY49768 | Canola | nucleus | 17.12 | 13.12 |
| CDX71262 | Canola | nucleus | 20.65 | 13.08 |
| CDY03991 | Canola | nucleus | 17.12 | 13.02 |
| CDY34512 | Canola | cytosol, nucleus, plastid | 10.33 | 12.93 |
| CDY49559 | Canola | nucleus | 20.38 | 12.89 |
| CDX69049 | Canola | nucleus | 20.38 | 12.56 |
| CDX75425 | Canola | nucleus | 20.11 | 12.52 |
| CDY34490 | Canola | cytosol | 3.26 | 9.76 |
Protein Annotations
| Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.1 | Gene3D:3.30.40.10 | GO:A0A078DAS2 | EnsemblPlants:CDX84438 | ProteinID:CDX84438 |
| ProteinID:CDX84438.1 | InterPro:E3_UB_ligase_RBR | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00141644001 | InterPro:IBR_dom | InterPro:IPR013083 | PFAM:PF01485 | PANTHER:PTHR11685 | PANTHER:PTHR11685:SF213 |
| SMART:SM00647 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EEB773 | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC03g50620D
Coordinates
chrLK031837:-:1181838..1183042
Molecular Weight (calculated)
42650.3 Da
IEP (calculated)
4.569
GRAVY (calculated)
-0.407
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDQQRPYS VLTRNEVKEK MNKQIDDISG VFYVSKNDAT VLFMYLRWDT LRVSERLGED KDKLLSESGL SSLVTDLSDS SWVICNNKTS DDHVNDGLIS
101: TPCCSHKFCT TCWREYLDSL EKNQTVISCP DQSCRASVGP DTIEKLTGKD KDFYESYIFR SYIEENKGLM IKQCPAPDCN YVIEFHQAND VEEYGLNVVC
201: LCGHTFCWRC GFESHRPVTC NNVSDWLSTE VEVSVVDRWE ERKAAMEGAQ DDLQDFEDYI IKNPDSLKEQ DVRIVREGLM LLIQCRQVLK WSCVYEYFHT
301: EHETSKKEYL QFLQDIATTT LQSYLKTLLA ETETAFYAAD ALVLCEVLRQ CRWSLLALRS MYLWKQLA
101: TPCCSHKFCT TCWREYLDSL EKNQTVISCP DQSCRASVGP DTIEKLTGKD KDFYESYIFR SYIEENKGLM IKQCPAPDCN YVIEFHQAND VEEYGLNVVC
201: LCGHTFCWRC GFESHRPVTC NNVSDWLSTE VEVSVVDRWE ERKAAMEGAQ DDLQDFEDYI IKNPDSLKEQ DVRIVREGLM LLIQCRQVLK WSCVYEYFHT
301: EHETSKKEYL QFLQDIATTT LQSYLKTLLA ETETAFYAAD ALVLCEVLRQ CRWSLLALRS MYLWKQLA
001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE
Arabidopsis Description
ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.