CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84438	Canola	cytosol	47.27	68.21
CDX84439	Canola	nucleus	77.02	62.35
CDY31353	Canola	nucleus	49.15	58.65
CDY39850	Canola	nucleus	48.59	57.85
AT5G63760.2	Thale cress	nucleus	46.7	54.87
AT5G63730.1	Thale cress	cytosol	51.98	54.55
CDY41534	Canola	nucleus	18.64	53.51
AT5G63750.1	Thale cress	nucleus	53.11	52.61
CDX99147	Canola	nucleus	27.87	41.81
CDX99146	Canola	nucleus	34.65	41.26
CDY40734	Canola	nucleus	34.65	38.57
CDY44786	Canola	nucleus	33.33	36.72
CDY21562	Canola	nucleus	38.61	30.87
CDX69926	Canola	cytosol, mitochondrion, nucleus	36.35	28.76
CDY68345	Canola	cytosol	21.28	25.74
CDX70415	Canola	nucleus	24.11	24.38
CDY68344	Canola	nucleus	22.79	24.3
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	23.35	24.22
CDX84759	Canola	nucleus	23.54	23.99
CDX79440	Canola	cytosol	7.72	23.98
CDX79439	Canola	nucleus	14.69	23.85
CDY61443	Canola	nucleus	23.92	23.52
CDX91196	Canola	nucleus	22.41	23.38
CDX78438	Canola	nucleus	21.66	23.23
CDY63791	Canola	nucleus	24.11	23.15
CDY10162	Canola	nucleus	24.11	23.06
CDY15392	Canola	nucleus	23.92	22.8
CDY47704	Canola	nucleus	23.92	22.76
CDX84781	Canola	nucleus	23.73	22.74
CDX86547	Canola	nucleus	23.73	22.74
CDY19083	Canola	nucleus	23.73	22.7
CDY16406	Canola	nucleus	23.35	22.67
CDY47702	Canola	cytosol	22.22	22.65
CDY23938	Canola	nucleus	23.73	22.62
CDY42068	Canola	nucleus	19.4	22.54
CDY57807	Canola	nucleus	23.54	22.16
CDY10159	Canola	cytosol	22.03	22.16
CDY15374	Canola	nucleus	23.73	21.99
KRH24184	Soybean	nucleus	21.47	21.84
CDY15373	Canola	nucleus	22.22	21.57
CDY34490	Canola	cytosol	4.33	18.7
CDY49768	Canola	nucleus	16.57	18.33
CDY00148	Canola	nucleus	16.57	18.18
CDY20037	Canola	nucleus	17.89	18.13
CDY03991	Canola	nucleus	16.38	17.98
CDY34512	Canola	cytosol, nucleus, plastid	9.42	17.01
CDX71262	Canola	nucleus	18.46	16.87
CDY49559	Canola	nucleus	18.46	16.84
CDX75425	Canola	nucleus	17.51	15.74
CDX69049	Canola	nucleus	17.51	15.58

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	GO:A0A078HXU0	UniProt:A0A078HXU0	EnsemblPlants:CDY41533
ProteinID:CDY41533	ProteinID:CDY41533.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00073160001	InterPro:IBR_dom	InterPro:IPR001876
InterPro:IPR013083	PFAM:PF01485	ScanProsite:PS01358	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	SMART:SM00647
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EDB667	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg

Description

BnaA06g22860DBnaA06g22860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXU0]

Coordinates

chrLK032499:-:264675..269093

Molecular Weight (calculated)

61112.3 Da

IEP (calculated)

4.454

GRAVY (calculated)

-0.497

Length

531 amino acids

Sequence
(BLAST)

001: MEDDDLQRPY SVCTRDDLKE RITKQIDVIS EIFCVSNSDA TVLLMKLRWN SQLLSERLSQ ENKKLLTESG LKPVDVTDSN QDLSDSSCDE FYEFFDDVDD
101: DDRDDVVKVS TPFCSHKFST AYWSKYLEKN FFSVEKTVDT ISCPHEDCGA SVGRDTIEKL TVNDKNSYDE YVLRSYLEKS KRQIKQCPAQ GCSYFIEFHK
201: GTDAEEYGLN VVCLCGHNFC CRCSLETHRP VTCNNASDWL SRDLQKLSEA SDKSLSFLWI EDNTETCPHC LSPLEIGLGS LDSKFVPCGY CSGSFCWECM
301: HSEESHKTES GTYGDCLEPV EQDPLWNVEV VDTSCLDRWE ACEAAMEGAQ DDLQDFEDYI IKNPDSLKEQ DVRIVREGLM LLIQCRQVLK WSCVYEYFHT
401: EHETSKKEYL QFLQDIATTT LQSYLKTLQE ETETAFYAAD ALVLCKFRHS LTTATSNVGN FFYHFIKTLQ DGIVDVKVKS YDNVAGPYWL CDRCTYGNSW
501: LEMKCKMCCE TTTSKLNDLS LKWVSKRSYQ H

Best Arabidopsis Sequence Match ( AT5G63750.1 )
(BLAST)

001: MENNREGPYS VLTRDQLKGN MKKQIAEISE IFSLSKPDAT VLLMFLRWDS HEVSEFLVEN NEKVLSESGL KPVVVDPNQD LYKISSCGIC FKTCDDGDYL
101: ISTPFCSHMF CKSCWRKYLE KNFYLVEKTQ TRISCPHGAC QAAVGPDTIQ KLTVCDQEMY VEYILRSYIE GNKVLEIKYC PAQDCNYVIE FHQKNHDGAD
201: QEDYGFNVVC LCGHIFCWRC MLESHKPVTC NNASDWLFRD LNSLSKESGE KPLSLSSFET REKTYPLSSI KATKKVCPHC LRPADLGTKQ YLRFLTCACN
301: GRFCWKCMQP EEAHKTESGF YKFCNVSMTF EGRAPKTLEG RAEPENSCVG LWKASEVSLK QAKSDLQAFE ESNIKNPSDL TEKDFTIIRK GLMLIVQCRQ
401: VLKWSCVYDY LHAEYEMSKR EYLRFLQADA TSLVESFSKT LNEEIGRASS ATYENFCCVK HKVTIETSNI GNYFYHFIKT LQEGLDDVKV KSYDDYGGLF
501: WLCDRCTYGN TWFHKECLMC SDDIAARVDL SDMSLN

Arabidopsis Description

ARI13Probable E3 ubiquitin-protein ligase ARI13 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.