CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028646.1-P	Field mustard	nucleus	98.11	98.53
CDY44786	Canola	nucleus	90.15	89.21
CDX99147	Canola	nucleus	33.12	44.63
CDX99146	Canola	nucleus	40.88	43.72
CDY21562	Canola	nucleus	59.75	42.92
CDX69926	Canola	cytosol, mitochondrion, nucleus	58.07	41.28
CDX84438	Canola	cytosol	30.4	39.4
CDY39850	Canola	nucleus	32.49	34.75
CDY41533	Canola	nucleus	38.57	34.65
CDY31353	Canola	nucleus	31.24	33.48
CDY41534	Canola	nucleus	11.95	30.81
CDX84439	Canola	nucleus	36.06	26.22
CDX79440	Canola	cytosol	8.6	23.98
CDY16406	Canola	nucleus	27.04	23.58
CDY68345	Canola	cytosol	21.59	23.46
CDY23938	Canola	nucleus	27.04	23.16
CDY68344	Canola	nucleus	24.11	23.09
CDY57807	Canola	nucleus	27.25	23.05
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	24.74	23.05
CDX84781	Canola	nucleus	26.62	22.92
CDX70415	Canola	nucleus	25.16	22.86
CDY15392	Canola	nucleus	26.62	22.8
CDY63791	Canola	nucleus	26.42	22.78
CDX86547	Canola	nucleus	26.42	22.74
CDX79439	Canola	nucleus	15.51	22.63
CDY42068	Canola	nucleus	21.59	22.54
CDY19083	Canola	nucleus	26.21	22.52
CDX84759	Canola	nucleus	24.53	22.46
CDX78438	Canola	nucleus	23.06	22.22
CDY10162	Canola	nucleus	25.79	22.16
CDY47704	Canola	nucleus	25.79	22.04
CDY34490	Canola	cytosol	5.45	21.14
CDY15374	Canola	nucleus	24.95	20.77
CDY61443	Canola	nucleus	23.48	20.74
CDY15373	Canola	nucleus	23.69	20.66
KRH24184	Soybean	nucleus	22.43	20.5
CDX91196	Canola	nucleus	21.8	20.43
CDY10159	Canola	cytosol	21.38	19.32
CDY47702	Canola	cytosol	20.75	19.0
CDY34512	Canola	cytosol, nucleus, plastid	11.53	18.71
CDY00148	Canola	nucleus	16.35	16.12
CDY20037	Canola	nucleus	17.61	16.03
CDY49768	Canola	nucleus	15.93	15.83
CDY03991	Canola	nucleus	15.93	15.7
CDY49559	Canola	nucleus	18.87	15.46
CDX75425	Canola	nucleus	18.45	14.89
CDX69049	Canola	nucleus	18.45	14.74
CDX71262	Canola	nucleus	17.82	14.63

Protein Annotations

Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.1	Gene3D:3.30.40.10	GO:A0A078HTS8	UniProt:A0A078HTS8	EnsemblPlants:CDY40734
ProteinID:CDY40734	ProteinID:CDY40734.1	InterPro:E3_UB_ligase_RBR	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00071629001	InterPro:IBR_dom	InterPro:IPR001876
InterPro:IPR013083	PFAM:PF01485	ScanProsite:PS01358	PANTHER:PTHR11685	PANTHER:PTHR11685:SF213	SMART:SM00647
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE7BEE	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RanBP2	SEG:seg

Description

BnaAnng05970DBnaAnng05970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTS8]

Coordinates

chrLK032478:+:58954..60387

Molecular Weight (calculated)

54820.8 Da

IEP (calculated)

5.300

GRAVY (calculated)

-0.455

Length

477 amino acids

Sequence
(BLAST)

001: MNYNGRRLYS VHTREEIREK MMKEVVQISE VFSLSLSDAT VILVHLCWNL CKASDRLVDD KEKFLSELGL VGSSDEDLEV DGEGDDNLVS TPFCSHKFSR
101: DCWRDYLSKT LKKKKKKEDE RVLSISCLSQ DCVASVGPGT VEKLGEPVKE MYERYLLASF MESNKETIKR CPDCDDYAIK RHDEVPSEDF DVVCLCGHIF
201: CWSCQLESHR PVTCNNASFW LNELLYKSRN LARTAKRIKH CPECYSLVEN HDGVWKCTDC SVSQPSNDSA LIRHMTLWET SDAALQRSKW DLEAVEEKTM
301: DANCLRELDM KAIREAWMLT VQCRLVLKWS CVFGYFISDY HIAKKEYLDY LREKATANLS KHKETLHEVT DGIISGGGGI IAFREKLGDT TETTGNYFRF
401: FVKTLEDGLC DVKVDAYEDV TTDYWFCDRC TFKNDSFDQE CRMCVFSFES PPHVALCNVN SSASSHQQQQ VTNVPNK

Best Arabidopsis Sequence Match ( AT5G08730.1 )
(BLAST)

001: MEADGQKYSV LAKTQVREKM MKEIEQISEV FLVSKSDATV ILIRLGWNSF KASDLLGDNK EKFLAKLGLA RVLNSNSSSA DRETGDGDYL VSTPFCSHKF
101: STTCWSEYLS DALKKNKEQR GLISCLSQDC VASVGPDTIE QLTEPVKEMY ENYILESFME CHKATIKWCP ASGCEYAVEL QEDGNEDNVI SVVCLCGHTF
201: CWTCGLESHR PVSCKKASIW WTYLLDQSRS ISWIHTNTKS CPKCKIPVQQ NGDPNYRLIN CICSNNFCWI CLRTEEQHQG NWNCSPVAVP AAGPSTVEFS
301: QILHLNLWEA GHEALKKAKS KLRALEEKII PKLIENCGAT ELDIRTVREA GMLSVQCRQV LKWSCVFDYS IIEYESTKKQ YLKHLRALAS TMLCMHEGKL
401: DELIHLALSP EDFTNYKHKL EISTTCTGNH FDGFIKELED GKPEVKADGY ENEPGSRWFC DRCTFENSWV DKQCKMCFFP LDYHPSPQVA AAPEDLGKSE

Arabidopsis Description

ARI16Probable E3 ubiquitin-protein ligase ARI16 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.