Factsheet for PGSC0003DMT400047862

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064917	Potato	cytoskeleton, cytosol, peroxisome	61.55	71.94
PGSC0003DMT400049911	Potato	mitochondrion	52.58	58.74
PGSC0003DMT400001575	Potato	cytosol	30.09	40.99
PGSC0003DMT400008489	Potato	cytosol	23.4	37.02
EER97086	Sorghum	extracellular	42.71	36.73
KRH29358	Soybean	extracellular, vacuole	43.62	36.7
Zm00001d006205_P001	Maize	extracellular	42.1	36.02
KRH58831	Soybean	extracellular	43.16	35.81
PGSC0003DMT400023132	Potato	extracellular	33.28	35.44
TraesCS5A01G318800.1	Wheat	extracellular	41.19	35.38
HORVU5Hr1G081390.6	Barley	endoplasmic reticulum, extracellular, plasma membrane	41.34	35.32
PGSC0003DMT400024344	Potato	cytosol	38.75	35.12
TraesCS5D01G325000.1	Wheat	extracellular	41.19	35.06
TraesCS5B01G319300.2	Wheat	extracellular	41.03	34.79
Zm00001d021283_P001	Maize	extracellular, plasma membrane	41.79	34.68
PGSC0003DMT400000381	Potato	extracellular, plasma membrane	34.5	30.43
PGSC0003DMT400055014	Potato	cytosol, nucleus, plastid	34.65	30.4
PGSC0003DMT400025767	Potato	extracellular, plasma membrane, vacuole	35.11	29.88
PGSC0003DMT400091877	Potato	cytosol	16.11	28.96

Protein Annotations

Gene3D:2.60.40.2310	Gene3D:3.40.50.200	Gene3D:3.50.30.30	MapMan:35.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004252	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008236
GO:GO:0016787	GO:GO:0019538	InterPro:IPR036852	UniProt:M1BLJ7	PFAM:PF00082	PFAM:PF05922
EnsemblPlantsGene:PGSC0003DMG400018602	PGSC:PGSC0003DMG400018602	EnsemblPlants:PGSC0003DMT400047862	PRINTS:PR00723	ScanProsite:PS00138	PANTHER:PTHR43806
PANTHER:PTHR43806:SF18	InterPro:Peptidase_S8/S53_dom	InterPro:Peptidase_S8/S53_dom_sf	InterPro:Peptidase_S8_Ser-AS	InterPro:Peptidase_S8_subtilisin-rel	InterPro:Peptidases_S8_3
InterPro:S8pro/Inhibitor_I9	SUPFAM:SSF52743	UniParc:UPI00029505FD	:	:	:

Description

Cucumisin [Source:PGSC_GENE;Acc:PGSC0003DMG400018602]

Coordinates

chr5:-:10463092..10468294

Molecular Weight (calculated)

71278.0 Da

IEP (calculated)

8.237

GRAVY (calculated)

-0.153

Length

658 amino acids

Sequence
(BLAST)

001: MVYSYRHGFS GFAAKLTDHQ AKQIGGIWGD SEAFNDKGLG PIPSRWKGSC KSEGNFNATK HCNRKIIGAR WYIKGLMEEK GLNQTMVEKI YNLSPLDDIG
101: HGTHVAYTAA GSYVNNLEYY GLNMGTVRGG APNARIAMYK IGWVDDKGDS YCGGVDILAG IDDAIKDGVD VLSASFGGDL INFAEVDTSG SYSVMGIGSF
201: HAASLGIPFV VAGGNAGPDS YTVTPTSPWI ILVAASNEDR EIVTPLTLAN NNTILGKGIF QGKEQAFASL VTFKNITSPE DIKTINVEEV KGKVLMLFLQ
301: TEDDIYTSLT TLNTSGVLAF IVATHPLIGI NDYNQIIGVP IPFVYVDLEQ GNQIFDYFQQ CKSSNLDPKI KISRSEVLEG QKVYLKVPKF SSRGPSSLTP
401: DILKPDIAAP GVNILAAIPP NKGGDNGFQL MSGTSMAAPH ISGIIGLHKV AHPNWSPAAI KSALVTTAWN EDTYGSEIFS EGAGDKIADP FDFGGGICNP
501: NGAMDPGLIY DMDNNDYLNY LCSLGYSNEK VRNATTYFFD TKNSTTKRGI ICPSKVPSRL DLNLPSISIS NLENSVTIRR TVTNVGNVNS IYKLVVKPPR
601: NSAIKVSPHV LKFNSKTKKI SFEVKIISTH QRKSKFNFGS LAWSDGKHYV RIPIAVRK

Best Arabidopsis Sequence Match ( AT4G10520.1 )
(BLAST)

001: MSKTILFLAL FLSIVLNVQI SFVVAESKVY VVYLGEKEHD NPESVTESHH QMLWSLLGSK EAVLDSIVYS YRHGFSGFAA KLTESQAQQI SELPEVVQVI
101: PNTLYEMTTT RTWDYLGVSP GNSDSLLQKA NMGYNVIVGV IDSGVWPESE MFNDKGFGPI PSRWKGGCES GELFNASIHC NRKLIGAKYF VDGLVAEFGV
201: VNRTQNPEYL SPRDFAGHGT HVASTIGGSF LPNVSYVGLG RGTARGGAPG VHIAVYKACW SGYCSGADVL KAMDEAIHDG VDILSLSLGP SVPLFPETEH
301: TSVGAFHAVA KGIPVVIAAG NAGPTAQTIS NVAPWVLTVA ATTQDRSFPT AITLGNNITI LGQAIYGGPE LGFVGLTYPE SPLSGDCEKL SANPNSTMEG
401: KVVLCFAAST PSNAAIAAVI NAGGLGLIMA KNPTHSLTPT RKFPWVSIDF ELGTDILFYI RSTRSPIVKI QASKTLFGQS VSTKVATFSS RGPNSVSPAI
501: LKPDIAAPGV NILAAISPNS SINDGGFAMM SGTSMATPVV SGVVVLLKSL HPDWSPSAIK SAIVTTAWRT DPSGEPIFAD GSSRKLADPF DYGGGLINPE
601: KAVKPGLIYD MTTDDYVMYM CSVDYSDISI SRVLGKITVC PNPKPSVLDL NLPSITIPNL RGEVTLTRTV TNVGPVNSVY KVVIDPPTGI NVAVTPAELV
701: FDYTTTKRSF TVRVSTTHKV NTGYYFGSLT WTDNMHNVAI PVSVRTQILQ RYYDEN

Arabidopsis Description

SBT3.9Subtilisin-like protease SBT3.9 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSB0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.