Factsheet for Solyc01g009020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058429	Potato	extracellular	84.07	96.94
KRH18619	Soybean	cytosol	59.29	69.07
KRG89741	Soybean	cytosol	58.41	68.04
VIT_06s0009g02230.t01	Wine grape	cytosol	59.29	66.34
KRG98869	Soybean	cytosol	53.98	60.4
KRH14629	Soybean	cytosol	48.67	53.4
KRH14630	Soybean	cytosol	45.13	25.5
KRH14632	Soybean	cytosol	39.82	24.46
Solyc03g097270.2.1	Tomato	extracellular	49.56	23.83

Protein Annotations

Gene3D:3.10.450.650	MapMan:35.1	InterPro:Cystatin	InterPro:Cystatin_dom	GO:GO:0002020	GO:GO:0003674
GO:GO:0003824	GO:GO:0004869	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0009987	GO:GO:0010466	GO:GO:0010951	GO:GO:0016787
GO:GO:0019538	GO:GO:0030234	GO:GO:0030414	GO:GO:2000117	UniProt:K4AT98	PFAM:PD001231
PFAM:PF16845	ScanProsite:PS00287	PANTHER:PTHR11413	PANTHER:PTHR11413:SF57	InterPro:Prot_inh_cystat_CS	SMART:SM00043
SUPFAM:SSF54403	EnsemblPlantsGene:Solyc01g009020.2	EnsemblPlants:Solyc01g009020.2.1	UniParc:UPI000276332F	:	:

Description

Cysteine proteinase inhibitor [Source:UniProtKB/TrEMBL;Acc:K4AT98]

Coordinates

chr1:-:3021936..3024369

Molecular Weight (calculated)

12648.1 Da

IEP (calculated)

8.810

GRAVY (calculated)

-0.492

Length

113 amino acids

Sequence
(BLAST)

001: MTRDLLDAKK YNYSKMATLG GIREAGGSEN SLEINDLARF AVDEHNKKQN ALLEFGKVVN VKEQVVAGTM YYITLEATEG GKKKAYEAKV WVKPWQNFKQ
101: VEDFKLIGDA ATA

Best Arabidopsis Sequence Match ( AT3G12490.2 )
(BLAST)

001: MMRSRFLLFI VFFSLSLFIS SLIASDLGFC NEEMALVGGV GDVPANQNSG EVESLARFAV DEHNKKENAL LEFARVVKAK EQVVAGTLHH LTLEILEAGQ
101: KKLYEAKVWV KPWLNFKELQ EFKPASDAPA ITSSDLGCKQ GEHESGWREV PGDDPEVKHV AEQAVKTIQQ RSNSLFPYEL LEVVHAKAEV TGEAAKYNML
201: LKLKRGEKEE KFKVEVHKNH EGALHLNHAE QHHD

Arabidopsis Description

CYS6Cysteine proteinase inhibitor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0X6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.