Factsheet for PGSC0003DMT400058429

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
peroxisome 1
plastid 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g009020.2.1	Tomato	extracellular	96.94	84.07
KRG89741	Soybean	cytosol	68.37	69.07
KRH18619	Soybean	cytosol	67.35	68.04
VIT_06s0009g02230.t01	Wine grape	cytosol	66.33	64.36
KRG98869	Soybean	cytosol	62.24	60.4
KRH14629	Soybean	cytosol	55.1	52.43
PGSC0003DMT400068064	Potato	cytosol	56.12	27.36
KRH14630	Soybean	cytosol	52.04	25.5
KRH14632	Soybean	cytosol	45.92	24.46
PGSC0003DMT400069146	Potato	cytosol	54.08	22.84
PGSC0003DMT400015164	Potato	extracellular	53.06	16.67
PGSC0003DMT400015254	Potato	cytosol	57.14	11.07

Protein Annotations

EntrezGene:102601109	Gene3D:3.10.450.650	MapMan:35.1	InterPro:Cystatin	InterPro:Cystatin_dom	GO:GO:0003674
GO:GO:0004869	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010466	GO:GO:0010951
GO:GO:0019538	GO:GO:0030234	GO:GO:0030414	MEROPS:I25.014	UniProt:M1C2L8	PFAM:PD001231
PFAM:PF16845	EnsemblPlantsGene:PGSC0003DMG400022691	PGSC:PGSC0003DMG400022691	EnsemblPlants:PGSC0003DMT400058429	ScanProsite:PS00287	PANTHER:PTHR11413
PANTHER:PTHR11413:SF57	InterPro:Prot_inh_cystat_CS	SMART:SM00043	SUPFAM:SSF54403	UniParc:UPI000295D58C	RefSeq:XP_006362733.1

Description

Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022691]

Coordinates

chr1:-:5434685..5436817

Molecular Weight (calculated)

10822.8 Da

IEP (calculated)

5.897

GRAVY (calculated)

-0.385

Length

98 amino acids

Sequence
(BLAST)

1: MATLGGIREA GGSENSVEIN DLARFAVDEH NKKQNALLEF GKVVNVKEQV VAGTMYYITL EATEGGKKKA YEAKVWVKQW QNFKQVEDFK LIGDAASA

Best Arabidopsis Sequence Match ( AT3G12490.1 )
(BLAST)

001: MALVGGVGDV PANQNSGEVE SLARFAVDEH NKKENALLEF ARVVKAKEQV VAGTLHHLTL EILEAGQKKL YEAKVWVKPW LNFKELQEFK PASDAPAITS
101: SDLGCKQGEH ESGWREVPGD DPEVKHVAEQ AVKTIQQRSN SLFPYELLEV VHAKAECQ

Arabidopsis Description

CYS6Cysteine proteinase inhibitor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.