Factsheet for Solyc06g060840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 2
golgi 3
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	golgi, plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062064	Potato	plasma membrane	96.27	96.27
Solyc08g078160.2.1	Tomato	mitochondrion	79.85	76.43
VIT_02s0234g00110.t01	Wine grape	plastid	55.22	55.64
Solyc06g034040.1.1	Tomato	cytosol, golgi, plasma membrane, plastid	56.72	51.7
Solyc08g066040.1.1	Tomato	golgi, plasma membrane, plastid	35.07	33.57
Solyc02g086490.2.1	Tomato	extracellular	35.82	32.21
Solyc03g112440.1.1	Tomato	golgi, plasma membrane, plastid	35.07	30.72
Solyc12g010920.1.1	Tomato	cytosol, golgi, plasma membrane	38.81	30.23
Solyc03g119820.1.1	Tomato	plastid	33.58	27.27
Solyc06g069260.1.1	Tomato	plasma membrane, plastid	26.12	22.88

Protein Annotations

MapMan:5.9.2	GO:GO:0000003	GO:GO:0005575	GO:GO:0005576	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005811	GO:GO:0008150	GO:GO:0012511	GO:GO:0016020	GO:GO:0016021
GO:GO:0019915	GO:GO:0019953	UniProt:K4C6R4	InterPro:Oleosin	PFAM:PF01277	ScanProsite:PS00811
PANTHER:PTHR33203	EnsemblPlantsGene:Solyc06g060840.1	EnsemblPlants:Solyc06g060840.1.1	TMHMM:TMhelix	UniParc:UPI000276655F	SEG:seg

Description

Oleosin [Source:UniProtKB/TrEMBL;Acc:K4C6R4]

Coordinates

chr6:+:38869137..38869541

Molecular Weight (calculated)

14275.6 Da

IEP (calculated)

10.273

GRAVY (calculated)

0.351

Length

134 amino acids

Sequence
(BLAST)

001: MQTQPRHEQH LSRQVAKTTT AVTVGGSLMV LSGLMLAATV IGLAIATPLL VIFSPVLVPA VITIGLILGG FLASGGFGAT ASFVFYWMYR YVTGKHPIGA
101: TKIDYARDKI AHAANDVKEK AEQLGHQAQQ QIKS

Best Arabidopsis Sequence Match ( AT4G25140.1 )
(BLAST)

001: MADTARGTHH DIIGRDQYPM MGRDRDQYQM SGRGSDYSKS RQIAKAATAV TAGGSLLVLS SLTLVGTVIA LTVATPLLVI FSPILVPALI TVALLITGFL
101: SSGGFGIAAI TVFSWIYKYA TGEHPQGSDK LDSARMKLGS KAQDLKDRAQ YYGQQHTGGE HDRDRTRGGQ HTT

Arabidopsis Description

OLEO1Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.