Factsheet for Solyc11g021130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088629	Potato	mitochondrion	42.81	93.13
Solyc01g007670.2.1	Tomato	nucleus, plastid	47.72	87.74
Solyc09g050080.1.1	Tomato	cytosol	46.67	85.81
Solyc01g018060.1.1	Tomato	cytosol, mitochondrion	14.74	79.25
Solyc11g020830.1.1	Tomato	cytosol, nucleus, plastid	17.19	61.25
Solyc09g061450.1.1	Tomato	plastid	22.11	48.09
KRH21558	Soybean	mitochondrion	12.28	46.05
Solyc01g017400.1.1	Tomato	cytosol	30.18	39.63

Protein Annotations

Gene3D:1.10.455.10	MapMan:17.7.2.2.7	Gene3D:2.40.50.140	GO:GO:0000028	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016043	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	InterPro:IPR036823	UniProt:K4D762	HAMAP:MF_00480_B	InterPro:NA-bd_OB-fold
PFAM:PF00164	PFAM:PF00177	PRINTS:PR01034	ScanProsite:PS00052	ScanProsite:PS00055	PANTHER:PTHR11205
PANTHER:PTHR11205:SF19	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S12_bac	InterPro:Ribosomal_S5/S7	InterPro:Ribosomal_S7_CS	InterPro:Ribosomal_S7_bac/org-type
InterPro:Ribosomal_S7_dom	InterPro:Ribosomal_S7_dom_sf	SUPFAM:SSF47973	SUPFAM:SSF50249	EnsemblPlantsGene:Solyc11g021130.1	EnsemblPlants:Solyc11g021130.1.1
TIGRFAMs:TIGR00981	TIGRFAMs:TIGR01029	UniParc:UPI000276966C	:	:	:

Description

Ribosomal protein S7 [Source:UniProtKB/TrEMBL;Acc:K4D762]

Coordinates

chr11:-:13369106..13370634

Molecular Weight (calculated)

31995.0 Da

IEP (calculated)

11.162

GRAVY (calculated)

-0.430

Length

285 amino acids

Sequence
(BLAST)

001: MDSIQLEHEN VTKLVLVTLR GGVKEGGGFS NTENDPMNSK ELNEESKGNL FVNFFTITAK KPNSALRKVA RIRLTSGFEI TAYIPGIGHN SQEHSIVLVR
101: GGRVKYLPIV RYHIVRGTLD VVGVKDRQQG RFNSRYCRKK IAKSDPIYRN RLVHILVNRI LKHGKKSLAY QIIYRAVKKI QQKTETNPLS VLRQAIHGVT
201: PDITVKARRL GGSSHQVPIE IGSTQGKELA IRWLLVASRK RPGRNMAFKL SGELVDAAKG SGDAIRKKEE THRMAEANRS FAHFL

Best Arabidopsis Sequence Match ( ATCG01240.1 )
(BLAST)

001: MSRRGTAEEK TAKSDPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRALKKI QQKTETNPLS VLRQAIRGVT PDIAVKARRV GGSTHQVPIE IGSTQGKALA
101: IRWLLGASRK RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR

Arabidopsis Description

RPS7-A30S ribosomal protein S7, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q6KGZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.