Factsheet for Solyc01g007670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030854	Potato	mitochondrion	91.61	97.93
Solyc09g050080.1.1	Tomato	cytosol	95.48	95.48
Solyc01g018060.1.1	Tomato	cytosol, mitochondrion	28.39	83.02
Solyc11g020830.1.1	Tomato	cytosol, nucleus, plastid	31.61	61.25
KRH21558	Soybean	mitochondrion	27.1	55.26
Solyc09g061450.1.1	Tomato	plastid	43.23	51.15
Solyc11g021130.1.1	Tomato	cytosol, nucleus	87.74	47.72
Solyc01g017400.1.1	Tomato	cytosol	59.35	42.4

Protein Annotations

Gene3D:1.10.455.10	MapMan:17.7.2.2.7	UniProt:A0A0C5CUU8	ProteinID:ABC56346.1	ProteinID:ABC56361.1	ProteinID:AJO25157.1
ProteinID:AJO25169.1	ProteinID:AJY79067.1	ProteinID:AJY79081.1	ProteinID:ASR92467.1	ProteinID:ASR92479.1	ProteinID:ASR92554.1
ProteinID:ASR92567.1	ProteinID:CAJ32440.1	ProteinID:CAJ32454.1	GO:GO:0000028	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015935
GO:GO:0016043	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR036823	HAMAP:MF_00480_B
PFAM:PF00177	PIRSF:PIRSF002122	ScanProsite:PS00052	PANTHER:PTHR11205	PANTHER:PTHR11205:SF19	UniProt:Q2MI54
InterPro:Ribosomal_S5/S7	InterPro:Ribosomal_S7_CS	InterPro:Ribosomal_S7_bac/org-type	InterPro:Ribosomal_S7_dom	InterPro:Ribosomal_S7_dom_sf	SUPFAM:SSF47973
EnsemblPlantsGene:Solyc01g007670.2	EnsemblPlants:Solyc01g007670.2.1	TIGRFAMs:TIGR01029	UniParc:UPI00001349E4	:	:

Description

rps7-A30S ribosomal protein S7, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A0C5CUU8]

Coordinates

chr1:-:1893908..1894685

Molecular Weight (calculated)

17387.4 Da

IEP (calculated)

11.965

GRAVY (calculated)

-0.583

Length

155 amino acids

Sequence
(BLAST)

001: MSRRGTAEKK TAKSDPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRAVKKI QQKTETNPLS VLRQAIRGVT PDITVKARRV GGSTHQVPIE IGSTQGKALA
101: IRWLLAASRK RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR

Best Arabidopsis Sequence Match ( ATCG01240.1 )
(BLAST)

001: MSRRGTAEEK TAKSDPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRALKKI QQKTETNPLS VLRQAIRGVT PDIAVKARRV GGSTHQVPIE IGSTQGKALA
101: IRWLLGASRK RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR

Arabidopsis Description

RPS7-A30S ribosomal protein S7, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q6KGZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.