Factsheet for PGSC0003DMT400030854

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088629	Potato	mitochondrion	90.34	100.0
CDY44968	Canola	cytosol	26.9	97.5
Solyc01g007670.2.1	Tomato	nucleus, plastid	97.93	91.61
HORVU4Hr1G048750.1	Barley	cytosol	24.83	90.0
Solyc09g050080.1.1	Tomato	cytosol	95.17	89.03
HORVU5Hr1G032310.3	Barley	cytosol	93.79	87.18
HORVU6Hr1G046780.2	Barley	cytosol, endoplasmic reticulum, mitochondrion	22.76	82.5
TraesCS6B01G357300.1	Wheat	mitochondrion	69.66	80.16
TraesCS4B01G238600.1	Wheat	cytosol	74.48	77.7
Bra041145.1-P	Field mustard	cytosol	83.45	77.56
HORVU7Hr1G107890.2	Barley	cytosol	83.45	77.56
HORVU6Hr1G049520.2	Barley	cytosol	83.45	77.56
HORVU2Hr1G121660.2	Barley	cytosol	83.45	77.56
HORVU0Hr1G034770.2	Barley	cytosol	83.45	77.56
HORVU0Hr1G034730.2	Barley	cytosol	83.45	77.56
HORVU0Hr1G031420.1	Barley	cytosol	83.45	77.56
GRMZM5G844628_P01	Maize	cytosol	83.45	77.56
AGP50799	Barley	cytosol, plastid	83.45	77.56
GRMZM5G806488_P01	Maize	plastid	83.45	77.56
TraesCSU01G238000.1	Wheat	cytosol, mitochondrion	82.76	76.92
TraesCS2B01G314400.1	Wheat	cytosol, mitochondrion	82.76	76.92
TraesCS4B01G146200.1	Wheat	cytosol	82.76	76.92
CAA33919	Rice	cytosol	82.76	76.92
TraesCS5D01G457500.1	Wheat	cytosol	82.76	76.92
CAA33942	Rice	cytosol, plasma membrane	82.76	76.92
TraesCSU01G157000.1	Wheat	cytosol	82.76	76.92
TraesCSU01G190200.1	Wheat	cytosol	82.76	76.92
TraesCSU01G238400.1	Wheat	cytosol, golgi	82.76	76.92
TraesCSU01G259500.1	Wheat	cytosol	82.76	76.92
HORVU5Hr1G004530.2	Barley	cytosol	82.76	76.92
HORVU2Hr1G121420.2	Barley	cytosol	82.76	76.92
HORVU0Hr1G034830.1	Barley	cytosol	80.0	76.32
HORVU5Hr1G064870.2	Barley	cytosol	82.07	76.28
TraesCSU01G158100.1	Wheat	cytosol	82.07	76.28
TraesCS3B01G013500.1	Wheat	cytosol	82.07	76.28
TraesCS1B01G406600.1	Wheat	cytosol	81.38	76.13
TraesCS6A01G114400.1	Wheat	cytosol	81.38	75.64
EES09873	Sorghum	cytosol	81.38	75.64
TraesCS3B01G187900.1	Wheat	cytosol	81.38	75.64
TraesCS1D01G179100.1	Wheat	cytosol	80.69	75.0
TraesCS6D01G375300.1	Wheat	cytosol	80.69	75.0
TraesCS1A01G157100.1	Wheat	cytosol	81.38	74.68
TraesCS4A01G024600.1	Wheat	cytosol, mitochondrion	79.31	74.68
TraesCS4A01G156100.1	Wheat	mitochondrion	76.55	71.61
TraesCS4D01G155300.1	Wheat	cytosol	68.28	71.22
TraesCS2B01G252700.1	Wheat	mitochondrion	75.17	69.87
TraesCSU01G149800.1	Wheat	cytosol	73.79	69.48
TraesCS3B01G231300.1	Wheat	cytosol	22.76	68.75
Os09t0110750-00	Rice	cytosol	17.93	59.09
OQU86590	Sorghum	mitochondrion	32.41	51.09
KRH21558	Soybean	mitochondrion	22.76	43.42

Protein Annotations

Gene3D:1.10.455.10	MapMan:17.7.2.2.7	EntrezGene:4099892	wikigene:4099892	EntrezGene:4099921	wikigene:4099921
ProteinID:ABB90084	ProteinID:ABB90084.1	ProteinID:ABB90096	ProteinID:ABB90096.1	ProteinID:ABD47102	ProteinID:ABD47102.1
ProteinID:ABD47116	ProteinID:ABD47116.1	ProteinID:AEB72185	ProteinID:AEB72185.1	ProteinID:AEB72198	ProteinID:AEB72198.1
ProteinID:AEB72271	ProteinID:AEB72271.1	ProteinID:AEB72284	ProteinID:AEB72284.1	ProteinID:AFX67016	ProteinID:AFX67016.1
EMBL:DQ231562	EMBL:DQ386163	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
InterPro:IPR036823	EMBL:JF772170	EMBL:JF772171	EMBL:JX905212	UniProt:M1AUW2	HAMAP:MF_00480_B
PFAM:PF00177	EnsemblPlantsGene:PGSC0003DMG400011820	PGSC:PGSC0003DMG400011820	EnsemblPlants:PGSC0003DMT400030854	PIRSF:PIRSF002122	ScanProsite:PS00052
PANTHER:PTHR11205	PANTHER:PTHR11205:SF19	InterPro:Ribosomal_S5/S7	InterPro:Ribosomal_S7_CS	InterPro:Ribosomal_S7_bac/org-type	InterPro:Ribosomal_S7_dom
InterPro:Ribosomal_S7_dom_sf	SUPFAM:SSF47973	TIGRFAMs:TIGR01029	UniParc:UPI000296DB0E	EntrezGene:rps7	wikigene:rps7

Description

30S ribosomal protein S7, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400011820]

Coordinates

chr6:+:40668709..40670506

Molecular Weight (calculated)

16271.1 Da

IEP (calculated)

12.003

GRAVY (calculated)

-0.477

Length

145 amino acids

Sequence
(BLAST)

001: MAKSNPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRAVKKI QQKTETNPLS VLRQAIRGVT PDITVKARRV GGSTHQVPIE IGSTQGKALA IRWLLAASRK
101: RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR

Best Arabidopsis Sequence Match ( ATCG01240.1 )
(BLAST)

001: MSRRGTAEEK TAKSDPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRALKKI QQKTETNPLS VLRQAIRGVT PDIAVKARRV GGSTHQVPIE IGSTQGKALA
101: IRWLLGASRK RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR

Arabidopsis Description

RPS7-A30S ribosomal protein S7, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q6KGZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.