Factsheet for TraesCSU01G238400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041145.1-P	Field mustard	cytosol	99.36	99.36
GRMZM5G806488_P01	Maize	plastid	99.36	99.36
GRMZM5G844628_P01	Maize	cytosol	99.36	99.36
HORVU0Hr1G031420.1	Barley	cytosol	99.36	99.36
TraesCS5D01G457500.1	Wheat	cytosol	98.08	98.08
TraesCSU01G157000.1	Wheat	cytosol	98.08	98.08
TraesCSU01G190200.1	Wheat	cytosol	98.08	98.08
TraesCSU01G238000.1	Wheat	cytosol, mitochondrion	97.44	97.44
TraesCSU01G259500.1	Wheat	cytosol	97.44	97.44
TraesCSU01G158100.1	Wheat	cytosol	96.79	96.79
TraesCSU01G149800.1	Wheat	cytosol	89.74	90.91
CDY44968	Canola	cytosol	22.44	87.5
PGSC0003DMT400088629	Potato	mitochondrion	69.87	83.21
PGSC0003DMT400030854	Potato	mitochondrion	76.92	82.76
KRH21558	Soybean	mitochondrion	23.08	47.37
Solyc09g061450.1.1	Tomato	plastid	38.46	45.8

Protein Annotations

Gene3D:1.10.455.10	MapMan:17.7.2.2.7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	InterPro:IPR036823	HAMAP:MF_00480_B	PFAM:PF00177	PIRSF:PIRSF002122
ScanProsite:PS00052	PANTHER:PTHR11205	PANTHER:PTHR11205:SF19	InterPro:Ribosomal_S5/S7	InterPro:Ribosomal_S7_CS	InterPro:Ribosomal_S7_bac/org-type
InterPro:Ribosomal_S7_dom	InterPro:Ribosomal_S7_dom_sf	SUPFAM:SSF47973	TIGRFAMs:TIGR01029	EnsemblPlantsGene:TraesCSU01G238400	EnsemblPlants:TraesCSU01G238400.1
TIGR:cd14871	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:354077684..354078154

Molecular Weight (calculated)

17640.9 Da

IEP (calculated)

12.286

GRAVY (calculated)

-0.674

Length

156 amino acids

Sequence
(BLAST)

001: MSRRGTAEKR TAKSDPIFRN RLVNMVVNRI MKDGKKSLAY QILYRAVKKI QQKTETNPLL VLRQAIRRVT PNIGVKTRRN KKGSTRKVPI EIGSKQGRAL
101: AIHWLLEASQ KRPGRNMAFK LSSELVDAAK GSGGAIRKKE ATHRMAEANR ALAHFR

Best Arabidopsis Sequence Match ( ATCG01240.1 )
(BLAST)

001: MSRRGTAEEK TAKSDPIYRN RLVNMLVNRI LKHGKKSLAY QIIYRALKKI QQKTETNPLS VLRQAIRGVT PDIAVKARRV GGSTHQVPIE IGSTQGKALA
101: IRWLLGASRK RPGRNMAFKL SSELVDAAKG SGDAIRKKEE THRMAEANRA FAHFR

Arabidopsis Description

RPS7-A30S ribosomal protein S7, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q6KGZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.